Hb_006120_130

Information

Type -
Description -
Location Contig6120: 69630-70301
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51047: 69759-70547
cDNA
(Sanger)
(ID:Location)		 007_O19.ab1: 69759-70416 , 009_H22.ab1: 69759-70416 , 009_N12.ab1: 69759-70416

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006120_130 0.0 - - -
2 Hb_000289_020 0.0860510006 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
3 Hb_000375_260 0.0961968392 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
4 Hb_000862_050 0.0992095283 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
5 Hb_008725_100 0.1060876903 - - PREDICTED: histone H1-like [Jatropha curcas]
6 Hb_043552_010 0.1098189813 - - PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B isoform X1 [Jatropha curcas]
7 Hb_002028_270 0.1113200065 - - Pectinesterase-1 precursor, putative [Ricinus communis]
8 Hb_001159_090 0.1113585034 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
9 Hb_000300_190 0.1145437678 - - PREDICTED: uncharacterized protein LOC105632566 [Jatropha curcas]
10 Hb_002639_050 0.1173741827 - - multicopper oxidase, putative [Ricinus communis]
11 Hb_000098_270 0.1181478901 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
12 Hb_004005_060 0.1196730516 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
13 Hb_003055_080 0.1210480178 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
14 Hb_000878_120 0.1221900467 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
15 Hb_001377_370 0.1325214221 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
16 Hb_003992_020 0.1329296717 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
17 Hb_002965_060 0.1333045755 - - Protein COBRA precursor, putative [Ricinus communis]
18 Hb_000996_040 0.1339149749 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
19 Hb_007126_010 0.1356327828 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
20 Hb_001195_550 0.1368362905 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006120_130 Hb_006120_130 Hb_000289_020 Hb_000289_020 Hb_006120_130--Hb_000289_020 Hb_000375_260 Hb_000375_260 Hb_006120_130--Hb_000375_260 Hb_000862_050 Hb_000862_050 Hb_006120_130--Hb_000862_050 Hb_008725_100 Hb_008725_100 Hb_006120_130--Hb_008725_100 Hb_043552_010 Hb_043552_010 Hb_006120_130--Hb_043552_010 Hb_002028_270 Hb_002028_270 Hb_006120_130--Hb_002028_270 Hb_000289_020--Hb_002028_270 Hb_000098_270 Hb_000098_270 Hb_000289_020--Hb_000098_270 Hb_005211_170 Hb_005211_170 Hb_000289_020--Hb_005211_170 Hb_000289_020--Hb_043552_010 Hb_003464_010 Hb_003464_010 Hb_000289_020--Hb_003464_010 Hb_001159_090 Hb_001159_090 Hb_000375_260--Hb_001159_090 Hb_001709_090 Hb_001709_090 Hb_000375_260--Hb_001709_090 Hb_000375_260--Hb_043552_010 Hb_000375_260--Hb_002028_270 Hb_003992_020 Hb_003992_020 Hb_000375_260--Hb_003992_020 Hb_000862_050--Hb_008725_100 Hb_000592_100 Hb_000592_100 Hb_000862_050--Hb_000592_100 Hb_004005_060 Hb_004005_060 Hb_000862_050--Hb_004005_060 Hb_006810_040 Hb_006810_040 Hb_000862_050--Hb_006810_040 Hb_007126_010 Hb_007126_010 Hb_000862_050--Hb_007126_010 Hb_008725_100--Hb_000592_100 Hb_008725_100--Hb_000098_270 Hb_000010_440 Hb_000010_440 Hb_008725_100--Hb_000010_440 Hb_008725_100--Hb_007126_010 Hb_009252_080 Hb_009252_080 Hb_043552_010--Hb_009252_080 Hb_043552_010--Hb_001709_090 Hb_000162_190 Hb_000162_190 Hb_043552_010--Hb_000162_190 Hb_000310_040 Hb_000310_040 Hb_043552_010--Hb_000310_040 Hb_043552_010--Hb_003992_020 Hb_001971_040 Hb_001971_040 Hb_002028_270--Hb_001971_040 Hb_002028_270--Hb_006810_040 Hb_000878_080 Hb_000878_080 Hb_002028_270--Hb_000878_080 Hb_000359_100 Hb_000359_100 Hb_002028_270--Hb_000359_100 Hb_002028_270--Hb_004005_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.672224 5.15677 20.2569 22.626 0.0712545 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.32079 2.76375

CAGE analysis