Hb_001159_090

Information

Type -
Description -
Location Contig1159: 83474-87791
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08050g
description STEROL-4ALPHA-METHYL OXIDASE 1-1 family protein
nr
ID XP_012087086.1
description PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
swissprot
ID Q8L7W5
description Methylsterol monooxygenase 1-1 OS=Arabidopsis thaliana GN=SMO1-1 PE=1 SV=1
trembl
ID A0A067JRW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20744 PE=4 SV=1
Gene Ontology
ID GO:0005506
description methylsterol monooxygenase 1-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04774: 83440-87649
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001159_090 0.0 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
2 Hb_000375_260 0.0543368659 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
3 Hb_002301_400 0.0819837205 - - structural constituent of cell wall, putative [Ricinus communis]
4 Hb_001157_050 0.0835797116 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
5 Hb_006196_030 0.0845196837 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
6 Hb_003750_120 0.0865238577 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
7 Hb_000359_100 0.0949526341 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001195_550 0.0955343693 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
9 Hb_001366_290 0.0967816308 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
10 Hb_000003_750 0.0969285301 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
11 Hb_004005_060 0.0996023957 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
12 Hb_001709_090 0.1039092817 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
13 Hb_000996_070 0.1048634219 - - unnamed protein product [Vitis vinifera]
14 Hb_070498_010 0.1059719068 - - receptor kinase, putative [Ricinus communis]
15 Hb_000862_050 0.1104890821 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
16 Hb_003935_040 0.1105662593 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
17 Hb_002028_270 0.1106144838 - - Pectinesterase-1 precursor, putative [Ricinus communis]
18 Hb_006120_130 0.1113585034 - - -
19 Hb_169893_010 0.1118679877 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
20 Hb_015048_020 0.1123100692 - - PREDICTED: myb-like protein D [Jatropha curcas]

Gene co-expression network

sample Hb_001159_090 Hb_001159_090 Hb_000375_260 Hb_000375_260 Hb_001159_090--Hb_000375_260 Hb_002301_400 Hb_002301_400 Hb_001159_090--Hb_002301_400 Hb_001157_050 Hb_001157_050 Hb_001159_090--Hb_001157_050 Hb_006196_030 Hb_006196_030 Hb_001159_090--Hb_006196_030 Hb_003750_120 Hb_003750_120 Hb_001159_090--Hb_003750_120 Hb_000359_100 Hb_000359_100 Hb_001159_090--Hb_000359_100 Hb_001709_090 Hb_001709_090 Hb_000375_260--Hb_001709_090 Hb_043552_010 Hb_043552_010 Hb_000375_260--Hb_043552_010 Hb_006120_130 Hb_006120_130 Hb_000375_260--Hb_006120_130 Hb_002028_270 Hb_002028_270 Hb_000375_260--Hb_002028_270 Hb_003992_020 Hb_003992_020 Hb_000375_260--Hb_003992_020 Hb_070498_010 Hb_070498_010 Hb_002301_400--Hb_070498_010 Hb_128196_010 Hb_128196_010 Hb_002301_400--Hb_128196_010 Hb_012404_020 Hb_012404_020 Hb_002301_400--Hb_012404_020 Hb_002301_400--Hb_006196_030 Hb_001195_550 Hb_001195_550 Hb_002301_400--Hb_001195_550 Hb_015048_020 Hb_015048_020 Hb_001157_050--Hb_015048_020 Hb_007632_160 Hb_007632_160 Hb_001157_050--Hb_007632_160 Hb_001366_290 Hb_001366_290 Hb_001157_050--Hb_001366_290 Hb_000003_750 Hb_000003_750 Hb_001157_050--Hb_000003_750 Hb_000996_070 Hb_000996_070 Hb_001157_050--Hb_000996_070 Hb_001157_050--Hb_128196_010 Hb_002490_060 Hb_002490_060 Hb_006196_030--Hb_002490_060 Hb_006196_030--Hb_000996_070 Hb_001794_040 Hb_001794_040 Hb_006196_030--Hb_001794_040 Hb_007123_010 Hb_007123_010 Hb_006196_030--Hb_007123_010 Hb_005496_040 Hb_005496_040 Hb_003750_120--Hb_005496_040 Hb_003750_120--Hb_000003_750 Hb_001007_020 Hb_001007_020 Hb_003750_120--Hb_001007_020 Hb_002045_210 Hb_002045_210 Hb_003750_120--Hb_002045_210 Hb_000418_110 Hb_000418_110 Hb_003750_120--Hb_000418_110 Hb_002203_010 Hb_002203_010 Hb_000359_100--Hb_002203_010 Hb_000359_100--Hb_002028_270 Hb_004005_060 Hb_004005_060 Hb_000359_100--Hb_004005_060 Hb_002818_060 Hb_002818_060 Hb_000359_100--Hb_002818_060 Hb_000359_100--Hb_001007_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.185337 8.10583 38.8127 42.0961 0.249943 0.106266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0271515 0 4.45993 11.3738

CAGE analysis