Hb_001366_290

Information

Type -
Description -
Location Contig1366: 251112-252254
Sequence    

Annotation

kegg
ID rcu:RCOM_1342080
description Alpha-expansin 1 precursor, putative
nr
ID XP_002515146.1
description Alpha-expansin 1 precursor, putative [Ricinus communis]
swissprot
ID Q9ZSI1
description Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=3 SV=1
trembl
ID B9RN07
description Alpha-expansin 1, putative OS=Ricinus communis GN=RCOM_1342080 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin-a17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_290 0.0 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
2 Hb_002490_060 0.0692216747 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
3 Hb_001157_050 0.075040058 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
4 Hb_039075_020 0.0879671173 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
5 Hb_000627_040 0.0888646923 - - leucine-rich repeat protein, putative [Ricinus communis]
6 Hb_015048_020 0.0905289055 - - PREDICTED: myb-like protein D [Jatropha curcas]
7 Hb_007290_050 0.0931741788 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
8 Hb_026240_020 0.0957206634 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
9 Hb_012404_020 0.0959291986 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001159_090 0.0967816308 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
11 Hb_006922_020 0.0977561975 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
12 Hb_006196_030 0.0980888039 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
13 Hb_021576_130 0.1005256977 - - PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]
14 Hb_000365_430 0.101244556 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
15 Hb_000112_080 0.1020131667 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
16 Hb_000418_170 0.1042371044 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
17 Hb_000996_070 0.1075105474 - - unnamed protein product [Vitis vinifera]
18 Hb_003092_020 0.1075743306 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
19 Hb_007237_020 0.1133037786 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
20 Hb_005730_110 0.1148293075 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]

Gene co-expression network

sample Hb_001366_290 Hb_001366_290 Hb_002490_060 Hb_002490_060 Hb_001366_290--Hb_002490_060 Hb_001157_050 Hb_001157_050 Hb_001366_290--Hb_001157_050 Hb_039075_020 Hb_039075_020 Hb_001366_290--Hb_039075_020 Hb_000627_040 Hb_000627_040 Hb_001366_290--Hb_000627_040 Hb_015048_020 Hb_015048_020 Hb_001366_290--Hb_015048_020 Hb_007290_050 Hb_007290_050 Hb_001366_290--Hb_007290_050 Hb_002490_060--Hb_000627_040 Hb_006922_020 Hb_006922_020 Hb_002490_060--Hb_006922_020 Hb_006196_030 Hb_006196_030 Hb_002490_060--Hb_006196_030 Hb_007237_020 Hb_007237_020 Hb_002490_060--Hb_007237_020 Hb_007123_010 Hb_007123_010 Hb_002490_060--Hb_007123_010 Hb_001157_050--Hb_015048_020 Hb_007632_160 Hb_007632_160 Hb_001157_050--Hb_007632_160 Hb_000003_750 Hb_000003_750 Hb_001157_050--Hb_000003_750 Hb_000996_070 Hb_000996_070 Hb_001157_050--Hb_000996_070 Hb_128196_010 Hb_128196_010 Hb_001157_050--Hb_128196_010 Hb_021576_130 Hb_021576_130 Hb_039075_020--Hb_021576_130 Hb_009393_090 Hb_009393_090 Hb_039075_020--Hb_009393_090 Hb_003873_020 Hb_003873_020 Hb_039075_020--Hb_003873_020 Hb_039075_020--Hb_006922_020 Hb_039075_020--Hb_002490_060 Hb_000627_040--Hb_007237_020 Hb_121313_010 Hb_121313_010 Hb_000627_040--Hb_121313_010 Hb_005730_110 Hb_005730_110 Hb_000627_040--Hb_005730_110 Hb_002053_180 Hb_002053_180 Hb_000627_040--Hb_002053_180 Hb_000627_040--Hb_006922_020 Hb_000032_420 Hb_000032_420 Hb_015048_020--Hb_000032_420 Hb_010449_010 Hb_010449_010 Hb_015048_020--Hb_010449_010 Hb_001117_050 Hb_001117_050 Hb_015048_020--Hb_001117_050 Hb_000112_080 Hb_000112_080 Hb_015048_020--Hb_000112_080 Hb_015048_020--Hb_000003_750 Hb_009189_100 Hb_009189_100 Hb_007290_050--Hb_009189_100 Hb_000365_430 Hb_000365_430 Hb_007290_050--Hb_000365_430 Hb_015934_080 Hb_015934_080 Hb_007290_050--Hb_015934_080 Hb_000310_110 Hb_000310_110 Hb_007290_050--Hb_000310_110 Hb_001936_180 Hb_001936_180 Hb_007290_050--Hb_001936_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0635977 0.245603 0.254527 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0461757 0.113659

CAGE analysis