Hb_015934_080

Information

Type -
Description -
Location Contig15934: 44595-46300
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06050g
description POPTRDRAFT_411355; hypothetical protein
nr
ID XP_012089850.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
swissprot
ID Q9M2K6
description PLASMODESMATA CALLOSE-BINDING PROTEIN 5 OS=Arabidopsis thaliana GN=PDCB5 PE=1 SV=2
trembl
ID B9GT34
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06050g PE=4 SV=2
Gene Ontology
ID GO:0016740
description glucan endo- -beta-glucosidase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14154: 44703-45558
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015934_080 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
2 Hb_009189_100 0.0731661191 - - PREDICTED: patellin-6 [Jatropha curcas]
3 Hb_002171_020 0.086440139 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
4 Hb_033312_070 0.0909378728 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
5 Hb_003935_040 0.0949875434 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
6 Hb_007290_050 0.0964929139 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
7 Hb_000162_190 0.0971813964 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
8 Hb_000329_720 0.100114334 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
9 Hb_000735_020 0.1008696463 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
10 Hb_011918_070 0.1047779709 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
11 Hb_000679_250 0.1068873943 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
12 Hb_025787_020 0.1093643803 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
13 Hb_001085_190 0.1094699113 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
14 Hb_000005_360 0.1108449959 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000310_110 0.1120278517 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
16 Hb_012518_080 0.1177754166 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
17 Hb_001138_070 0.1193312757 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
18 Hb_000645_160 0.1194126189 - - protein translocase, putative [Ricinus communis]
19 Hb_001936_180 0.1199574169 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
20 Hb_000003_750 0.1219338904 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_015934_080 Hb_015934_080 Hb_009189_100 Hb_009189_100 Hb_015934_080--Hb_009189_100 Hb_002171_020 Hb_002171_020 Hb_015934_080--Hb_002171_020 Hb_033312_070 Hb_033312_070 Hb_015934_080--Hb_033312_070 Hb_003935_040 Hb_003935_040 Hb_015934_080--Hb_003935_040 Hb_007290_050 Hb_007290_050 Hb_015934_080--Hb_007290_050 Hb_000162_190 Hb_000162_190 Hb_015934_080--Hb_000162_190 Hb_009189_100--Hb_002171_020 Hb_000329_720 Hb_000329_720 Hb_009189_100--Hb_000329_720 Hb_009189_100--Hb_007290_050 Hb_000365_430 Hb_000365_430 Hb_009189_100--Hb_000365_430 Hb_000310_110 Hb_000310_110 Hb_009189_100--Hb_000310_110 Hb_002171_020--Hb_000329_720 Hb_178049_010 Hb_178049_010 Hb_002171_020--Hb_178049_010 Hb_000005_360 Hb_000005_360 Hb_002171_020--Hb_000005_360 Hb_004558_060 Hb_004558_060 Hb_002171_020--Hb_004558_060 Hb_006788_110 Hb_006788_110 Hb_033312_070--Hb_006788_110 Hb_000735_020 Hb_000735_020 Hb_033312_070--Hb_000735_020 Hb_011918_070 Hb_011918_070 Hb_033312_070--Hb_011918_070 Hb_012518_080 Hb_012518_080 Hb_033312_070--Hb_012518_080 Hb_001085_190 Hb_001085_190 Hb_033312_070--Hb_001085_190 Hb_003935_040--Hb_000162_190 Hb_000345_230 Hb_000345_230 Hb_003935_040--Hb_000345_230 Hb_003935_040--Hb_000310_110 Hb_000020_050 Hb_000020_050 Hb_003935_040--Hb_000020_050 Hb_003935_040--Hb_009189_100 Hb_007290_050--Hb_000365_430 Hb_001366_290 Hb_001366_290 Hb_007290_050--Hb_001366_290 Hb_007290_050--Hb_000310_110 Hb_001936_180 Hb_001936_180 Hb_007290_050--Hb_001936_180 Hb_025787_020 Hb_025787_020 Hb_000162_190--Hb_025787_020 Hb_009252_080 Hb_009252_080 Hb_000162_190--Hb_009252_080 Hb_001141_440 Hb_001141_440 Hb_000162_190--Hb_001141_440 Hb_043552_010 Hb_043552_010 Hb_000162_190--Hb_043552_010 Hb_000162_190--Hb_000310_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0447493 1.20361 5.06129 9.47761 0.151818 0.0350198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0910348 0 0 1.82488 2.72596

CAGE analysis