Hb_002171_020

Information

Type -
Description -
Location Contig2171: 68264-72781
Sequence    

Annotation

kegg
ID rcu:RCOM_0925400
description protein phosphatase 2a, regulatory subunit, putative
nr
ID XP_002515563.1
description protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
swissprot
ID Q93YV6
description Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1
trembl
ID B9RP94
description Protein phosphatase 2a, regulatory subunit, putative OS=Ricinus communis GN=RCOM_0925400 PE=4 SV=1
Gene Ontology
ID GO:0000159
description serine threonine protein phosphatase 2a 57 kda regulatory subunit b iota isoform-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22421: 68308-72836 , PASA_asmbl_22422: 68277-72415
cDNA
(Sanger)
(ID:Location)		 039_H06.ab1: 71067-72834 , 050_G09.ab1: 71156-72834

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002171_020 0.0 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
2 Hb_009189_100 0.0632926926 - - PREDICTED: patellin-6 [Jatropha curcas]
3 Hb_000329_720 0.0664296049 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
4 Hb_178049_010 0.0740135619 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
5 Hb_000005_360 0.0838411375 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004558_060 0.0843010043 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
7 Hb_015934_080 0.086440139 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
8 Hb_009736_020 0.0936373633 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
9 Hb_002518_020 0.0958835863 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
10 Hb_092975_010 0.0960466761 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
11 Hb_149055_010 0.1041426961 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
12 Hb_000162_190 0.1050994615 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
13 Hb_033312_070 0.1083104948 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
14 Hb_001769_070 0.1091386976 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
15 Hb_002522_040 0.109784666 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
16 Hb_000568_020 0.1113587453 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]
17 Hb_000742_130 0.1116102606 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
18 Hb_000645_160 0.1118798947 - - protein translocase, putative [Ricinus communis]
19 Hb_007290_050 0.1124928866 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
20 Hb_003992_020 0.1134300765 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002171_020 Hb_002171_020 Hb_009189_100 Hb_009189_100 Hb_002171_020--Hb_009189_100 Hb_000329_720 Hb_000329_720 Hb_002171_020--Hb_000329_720 Hb_178049_010 Hb_178049_010 Hb_002171_020--Hb_178049_010 Hb_000005_360 Hb_000005_360 Hb_002171_020--Hb_000005_360 Hb_004558_060 Hb_004558_060 Hb_002171_020--Hb_004558_060 Hb_015934_080 Hb_015934_080 Hb_002171_020--Hb_015934_080 Hb_009189_100--Hb_000329_720 Hb_007290_050 Hb_007290_050 Hb_009189_100--Hb_007290_050 Hb_009189_100--Hb_015934_080 Hb_000365_430 Hb_000365_430 Hb_009189_100--Hb_000365_430 Hb_000310_110 Hb_000310_110 Hb_009189_100--Hb_000310_110 Hb_000329_720--Hb_000005_360 Hb_092975_010 Hb_092975_010 Hb_000329_720--Hb_092975_010 Hb_000329_720--Hb_000365_430 Hb_000742_130 Hb_000742_130 Hb_000329_720--Hb_000742_130 Hb_005648_020 Hb_005648_020 Hb_178049_010--Hb_005648_020 Hb_003466_010 Hb_003466_010 Hb_178049_010--Hb_003466_010 Hb_122951_010 Hb_122951_010 Hb_178049_010--Hb_122951_010 Hb_009736_020 Hb_009736_020 Hb_178049_010--Hb_009736_020 Hb_178049_010--Hb_004558_060 Hb_000005_360--Hb_009189_100 Hb_012404_020 Hb_012404_020 Hb_000005_360--Hb_012404_020 Hb_000005_360--Hb_000742_130 Hb_009113_080 Hb_009113_080 Hb_000005_360--Hb_009113_080 Hb_001369_190 Hb_001369_190 Hb_004558_060--Hb_001369_190 Hb_004558_060--Hb_009736_020 Hb_004558_060--Hb_005648_020 Hb_002518_020 Hb_002518_020 Hb_004558_060--Hb_002518_020 Hb_002918_270 Hb_002918_270 Hb_004558_060--Hb_002918_270 Hb_033312_070 Hb_033312_070 Hb_015934_080--Hb_033312_070 Hb_003935_040 Hb_003935_040 Hb_015934_080--Hb_003935_040 Hb_015934_080--Hb_007290_050 Hb_000162_190 Hb_000162_190 Hb_015934_080--Hb_000162_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.273952 7.19814 18.0324 41.5346 0.122947 0.0509207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0542327 7.07613 10.5515

CAGE analysis