Hb_009189_100

Information

Type -
Description -
Location Contig9189: 72733-75059
Sequence    

Annotation

kegg
ID pop:POPTR_0016s13540g
description POPTRDRAFT_808742; SEC14 cytosolic factor family protein
nr
ID XP_012089753.1
description PREDICTED: patellin-6 [Jatropha curcas]
swissprot
ID Q9SCU1
description Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1
trembl
ID A0A067JTF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00406 PE=4 SV=1
Gene Ontology
ID GO:0016021
description patellin-6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62318: 74207-74524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009189_100 0.0 - - PREDICTED: patellin-6 [Jatropha curcas]
2 Hb_002171_020 0.0632926926 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
3 Hb_000329_720 0.0639223148 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
4 Hb_007290_050 0.0679914963 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
5 Hb_015934_080 0.0731661191 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
6 Hb_000365_430 0.0811872236 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
7 Hb_000310_110 0.0890134703 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
8 Hb_000005_360 0.0920503413 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001138_070 0.0969461433 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
10 Hb_003935_040 0.0970960673 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
11 Hb_149055_010 0.0986399847 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
12 Hb_000645_160 0.0987435186 - - protein translocase, putative [Ricinus communis]
13 Hb_092975_010 0.1026597631 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
14 Hb_000162_190 0.1026903061 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
15 Hb_001936_180 0.1027769969 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
16 Hb_000098_260 0.1066511291 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
17 Hb_001085_190 0.1099966985 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
18 Hb_003992_020 0.1120453855 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
19 Hb_033312_070 0.1131864276 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
20 Hb_000742_130 0.1134407138 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]

Gene co-expression network

sample Hb_009189_100 Hb_009189_100 Hb_002171_020 Hb_002171_020 Hb_009189_100--Hb_002171_020 Hb_000329_720 Hb_000329_720 Hb_009189_100--Hb_000329_720 Hb_007290_050 Hb_007290_050 Hb_009189_100--Hb_007290_050 Hb_015934_080 Hb_015934_080 Hb_009189_100--Hb_015934_080 Hb_000365_430 Hb_000365_430 Hb_009189_100--Hb_000365_430 Hb_000310_110 Hb_000310_110 Hb_009189_100--Hb_000310_110 Hb_002171_020--Hb_000329_720 Hb_178049_010 Hb_178049_010 Hb_002171_020--Hb_178049_010 Hb_000005_360 Hb_000005_360 Hb_002171_020--Hb_000005_360 Hb_004558_060 Hb_004558_060 Hb_002171_020--Hb_004558_060 Hb_002171_020--Hb_015934_080 Hb_000329_720--Hb_000005_360 Hb_092975_010 Hb_092975_010 Hb_000329_720--Hb_092975_010 Hb_000329_720--Hb_000365_430 Hb_000742_130 Hb_000742_130 Hb_000329_720--Hb_000742_130 Hb_007290_050--Hb_000365_430 Hb_001366_290 Hb_001366_290 Hb_007290_050--Hb_001366_290 Hb_007290_050--Hb_015934_080 Hb_007290_050--Hb_000310_110 Hb_001936_180 Hb_001936_180 Hb_007290_050--Hb_001936_180 Hb_033312_070 Hb_033312_070 Hb_015934_080--Hb_033312_070 Hb_003935_040 Hb_003935_040 Hb_015934_080--Hb_003935_040 Hb_000162_190 Hb_000162_190 Hb_015934_080--Hb_000162_190 Hb_003092_020 Hb_003092_020 Hb_000365_430--Hb_003092_020 Hb_000365_430--Hb_001936_180 Hb_000098_260 Hb_000098_260 Hb_000365_430--Hb_000098_260 Hb_000310_110--Hb_003935_040 Hb_032260_060 Hb_032260_060 Hb_000310_110--Hb_032260_060 Hb_000310_110--Hb_000162_190 Hb_000345_230 Hb_000345_230 Hb_000310_110--Hb_000345_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153189 6.5825 21.9026 36.9714 0.128267 0.0704299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0249484 0 0.0371285 8.84834 10.3421

CAGE analysis