Hb_000329_720

Information

Type transcription factor
Description TF Family: ERF
Location Contig329: 551883-552653
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05500g
description hypothetical protein
nr
ID XP_006375232.1
description hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
swissprot
ID Q8LBQ7
description Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2
trembl
ID A9PL79
description TINY-like protein OS=Populus trichocarpa GN=TINYL10 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34581: 551860-552545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_720 0.0 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
2 Hb_009189_100 0.0639223148 - - PREDICTED: patellin-6 [Jatropha curcas]
3 Hb_002171_020 0.0664296049 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
4 Hb_000005_360 0.0707344816 - - conserved hypothetical protein [Ricinus communis]
5 Hb_092975_010 0.0846806346 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
6 Hb_000365_430 0.0932273082 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
7 Hb_000742_130 0.0945794583 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
8 Hb_003992_020 0.0948176928 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
9 Hb_015934_080 0.100114334 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
10 Hb_000098_260 0.1027782633 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
11 Hb_000645_160 0.1034278735 - - protein translocase, putative [Ricinus communis]
12 Hb_007290_050 0.1108251979 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
13 Hb_000375_260 0.1169056509 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
14 Hb_189208_050 0.1173070802 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
15 Hb_003935_040 0.1184047498 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
16 Hb_043552_010 0.1205729629 - - PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B isoform X1 [Jatropha curcas]
17 Hb_006120_210 0.1216375707 - - gibberellin 20-oxidase, putative [Ricinus communis]
18 Hb_000162_190 0.1223353343 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
19 Hb_004558_060 0.122816316 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
20 Hb_178049_010 0.1251830783 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_720 Hb_000329_720 Hb_009189_100 Hb_009189_100 Hb_000329_720--Hb_009189_100 Hb_002171_020 Hb_002171_020 Hb_000329_720--Hb_002171_020 Hb_000005_360 Hb_000005_360 Hb_000329_720--Hb_000005_360 Hb_092975_010 Hb_092975_010 Hb_000329_720--Hb_092975_010 Hb_000365_430 Hb_000365_430 Hb_000329_720--Hb_000365_430 Hb_000742_130 Hb_000742_130 Hb_000329_720--Hb_000742_130 Hb_009189_100--Hb_002171_020 Hb_007290_050 Hb_007290_050 Hb_009189_100--Hb_007290_050 Hb_015934_080 Hb_015934_080 Hb_009189_100--Hb_015934_080 Hb_009189_100--Hb_000365_430 Hb_000310_110 Hb_000310_110 Hb_009189_100--Hb_000310_110 Hb_178049_010 Hb_178049_010 Hb_002171_020--Hb_178049_010 Hb_002171_020--Hb_000005_360 Hb_004558_060 Hb_004558_060 Hb_002171_020--Hb_004558_060 Hb_002171_020--Hb_015934_080 Hb_000005_360--Hb_009189_100 Hb_012404_020 Hb_012404_020 Hb_000005_360--Hb_012404_020 Hb_000005_360--Hb_000742_130 Hb_009113_080 Hb_009113_080 Hb_000005_360--Hb_009113_080 Hb_000098_260 Hb_000098_260 Hb_092975_010--Hb_000098_260 Hb_002522_040 Hb_002522_040 Hb_092975_010--Hb_002522_040 Hb_092975_010--Hb_000742_130 Hb_092975_010--Hb_002171_020 Hb_004634_030 Hb_004634_030 Hb_092975_010--Hb_004634_030 Hb_003092_020 Hb_003092_020 Hb_000365_430--Hb_003092_020 Hb_001936_180 Hb_001936_180 Hb_000365_430--Hb_001936_180 Hb_000365_430--Hb_007290_050 Hb_000365_430--Hb_000098_260 Hb_000645_160 Hb_000645_160 Hb_000742_130--Hb_000645_160 Hb_002518_220 Hb_002518_220 Hb_000742_130--Hb_002518_220 Hb_000742_130--Hb_000098_260 Hb_006120_210 Hb_006120_210 Hb_000742_130--Hb_006120_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0615679 1.04594 2.58153 4.45602 0.0288795 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.85851 1.11473

CAGE analysis