Hb_002518_220

Information

Type -
Description -
Location Contig2518: 195304-197464
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04570g
description POPTRDRAFT_650190; hypothetical protein
nr
ID XP_012068394.1
description PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LGT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08535 PE=4 SV=1
Gene Ontology
ID GO:0007020
description glucose-6-phosphate isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26295: 195196-197432
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_220 0.0 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
2 Hb_000742_130 0.0805569926 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
3 Hb_003266_090 0.1004634208 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
4 Hb_003581_050 0.1035032966 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-54 [Jatropha curcas]
5 Hb_043630_030 0.1105398445 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
6 Hb_006120_210 0.1110913499 - - gibberellin 20-oxidase, putative [Ricinus communis]
7 Hb_012539_100 0.1129876894 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK11 [Jatropha curcas]
8 Hb_001054_040 0.1131526092 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
9 Hb_003747_250 0.1140522189 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
10 Hb_004228_070 0.1144237041 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
11 Hb_006196_030 0.1175958498 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
12 Hb_124677_090 0.1184634071 - - conserved hypothetical protein [Ricinus communis]
13 Hb_021576_130 0.1190629418 - - PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]
14 Hb_001638_340 0.1194351225 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007221_040 0.119655773 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
16 Hb_002205_150 0.1208663969 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
17 Hb_000005_360 0.1227355291 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004450_020 0.1244950784 - - serine-threonine protein kinase, putative [Ricinus communis]
19 Hb_002639_050 0.1266050452 - - multicopper oxidase, putative [Ricinus communis]
20 Hb_004634_030 0.1291272488 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002518_220 Hb_002518_220 Hb_000742_130 Hb_000742_130 Hb_002518_220--Hb_000742_130 Hb_003266_090 Hb_003266_090 Hb_002518_220--Hb_003266_090 Hb_003581_050 Hb_003581_050 Hb_002518_220--Hb_003581_050 Hb_043630_030 Hb_043630_030 Hb_002518_220--Hb_043630_030 Hb_006120_210 Hb_006120_210 Hb_002518_220--Hb_006120_210 Hb_012539_100 Hb_012539_100 Hb_002518_220--Hb_012539_100 Hb_000645_160 Hb_000645_160 Hb_000742_130--Hb_000645_160 Hb_000098_260 Hb_000098_260 Hb_000742_130--Hb_000098_260 Hb_000742_130--Hb_006120_210 Hb_092975_010 Hb_092975_010 Hb_000742_130--Hb_092975_010 Hb_000329_720 Hb_000329_720 Hb_000742_130--Hb_000329_720 Hb_002311_280 Hb_002311_280 Hb_003266_090--Hb_002311_280 Hb_022092_110 Hb_022092_110 Hb_003266_090--Hb_022092_110 Hb_001318_100 Hb_001318_100 Hb_003266_090--Hb_001318_100 Hb_003266_090--Hb_003581_050 Hb_003454_050 Hb_003454_050 Hb_003266_090--Hb_003454_050 Hb_007221_040 Hb_007221_040 Hb_003581_050--Hb_007221_040 Hb_007441_360 Hb_007441_360 Hb_003581_050--Hb_007441_360 Hb_010174_200 Hb_010174_200 Hb_003581_050--Hb_010174_200 Hb_007257_070 Hb_007257_070 Hb_003581_050--Hb_007257_070 Hb_122951_010 Hb_122951_010 Hb_043630_030--Hb_122951_010 Hb_017862_030 Hb_017862_030 Hb_043630_030--Hb_017862_030 Hb_001427_100 Hb_001427_100 Hb_043630_030--Hb_001427_100 Hb_000020_210 Hb_000020_210 Hb_043630_030--Hb_000020_210 Hb_003054_070 Hb_003054_070 Hb_043630_030--Hb_003054_070 Hb_043630_030--Hb_007221_040 Hb_003747_250 Hb_003747_250 Hb_006120_210--Hb_003747_250 Hb_000563_630 Hb_000563_630 Hb_006120_210--Hb_000563_630 Hb_002639_050 Hb_002639_050 Hb_006120_210--Hb_002639_050 Hb_001054_040 Hb_001054_040 Hb_006120_210--Hb_001054_040 Hb_002205_150 Hb_002205_150 Hb_012539_100--Hb_002205_150 Hb_004634_030 Hb_004634_030 Hb_012539_100--Hb_004634_030 Hb_142026_010 Hb_142026_010 Hb_012539_100--Hb_142026_010 Hb_106089_010 Hb_106089_010 Hb_012539_100--Hb_106089_010 Hb_002902_040 Hb_002902_040 Hb_012539_100--Hb_002902_040 Hb_012539_100--Hb_007221_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.147002 6.94152 10.2639 16.4899 0.147102 0.172068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.122121 0.0192172 0.0727385 1.60668 5.71395

CAGE analysis