Hb_001054_040

Information

Type -
Description -
Location Contig1054: 67997-73275
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05040g
description hypothetical protein
nr
ID KDP24826.1
description hypothetical protein JCGZ_25310 [Jatropha curcas]
swissprot
ID O22881
description Potassium transporter 2 OS=Arabidopsis thaliana GN=POT2 PE=1 SV=2
trembl
ID A0A067JLG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25310 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nf-x1-type zinc finger protein nfxl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01823: 63199-67233 , PASA_asmbl_01825: 68972-69351 , PASA_asmbl_01826: 69588-71533
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001054_040 0.0 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
2 Hb_022092_110 0.0985181711 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
3 Hb_002639_050 0.102125499 - - multicopper oxidase, putative [Ricinus communis]
4 Hb_002311_280 0.1042930049 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
5 Hb_003266_090 0.1070807241 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
6 Hb_012404_020 0.109706996 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002518_220 0.1131526092 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
8 Hb_000005_360 0.1156022768 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006120_210 0.1176361602 - - gibberellin 20-oxidase, putative [Ricinus communis]
10 Hb_003606_050 0.1179995204 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
11 Hb_005568_020 0.1200885004 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
12 Hb_004899_110 0.1220680276 - - PREDICTED: uncharacterized protein LOC105638015 [Jatropha curcas]
13 Hb_128196_010 0.1232397912 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001936_180 0.1236268587 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
15 Hb_001040_080 0.1238420288 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
16 Hb_000742_130 0.1239138279 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
17 Hb_001946_200 0.1262858162 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
18 Hb_000692_100 0.127975849 - - calcium-dependent protein kinase, putative [Ricinus communis]
19 Hb_001318_100 0.1287825283 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
20 Hb_021576_130 0.1294513568 - - PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001054_040 Hb_001054_040 Hb_022092_110 Hb_022092_110 Hb_001054_040--Hb_022092_110 Hb_002639_050 Hb_002639_050 Hb_001054_040--Hb_002639_050 Hb_002311_280 Hb_002311_280 Hb_001054_040--Hb_002311_280 Hb_003266_090 Hb_003266_090 Hb_001054_040--Hb_003266_090 Hb_012404_020 Hb_012404_020 Hb_001054_040--Hb_012404_020 Hb_002518_220 Hb_002518_220 Hb_001054_040--Hb_002518_220 Hb_001936_180 Hb_001936_180 Hb_022092_110--Hb_001936_180 Hb_001946_200 Hb_001946_200 Hb_022092_110--Hb_001946_200 Hb_001440_010 Hb_001440_010 Hb_022092_110--Hb_001440_010 Hb_000735_060 Hb_000735_060 Hb_022092_110--Hb_000735_060 Hb_000418_170 Hb_000418_170 Hb_022092_110--Hb_000418_170 Hb_022092_110--Hb_002311_280 Hb_001195_550 Hb_001195_550 Hb_002639_050--Hb_001195_550 Hb_002301_400 Hb_002301_400 Hb_002639_050--Hb_002301_400 Hb_001159_090 Hb_001159_090 Hb_002639_050--Hb_001159_090 Hb_006196_030 Hb_006196_030 Hb_002639_050--Hb_006196_030 Hb_000300_190 Hb_000300_190 Hb_002639_050--Hb_000300_190 Hb_007130_020 Hb_007130_020 Hb_002311_280--Hb_007130_020 Hb_002311_280--Hb_003266_090 Hb_033006_020 Hb_033006_020 Hb_002311_280--Hb_033006_020 Hb_044653_050 Hb_044653_050 Hb_002311_280--Hb_044653_050 Hb_000181_330 Hb_000181_330 Hb_002311_280--Hb_000181_330 Hb_003266_090--Hb_022092_110 Hb_001318_100 Hb_001318_100 Hb_003266_090--Hb_001318_100 Hb_003581_050 Hb_003581_050 Hb_003266_090--Hb_003581_050 Hb_003266_090--Hb_002518_220 Hb_003454_050 Hb_003454_050 Hb_003266_090--Hb_003454_050 Hb_070498_010 Hb_070498_010 Hb_012404_020--Hb_070498_010 Hb_012404_020--Hb_002301_400 Hb_128196_010 Hb_128196_010 Hb_012404_020--Hb_128196_010 Hb_005730_110 Hb_005730_110 Hb_012404_020--Hb_005730_110 Hb_001366_290 Hb_001366_290 Hb_012404_020--Hb_001366_290 Hb_028008_040 Hb_028008_040 Hb_012404_020--Hb_028008_040 Hb_000742_130 Hb_000742_130 Hb_002518_220--Hb_000742_130 Hb_002518_220--Hb_003581_050 Hb_043630_030 Hb_043630_030 Hb_002518_220--Hb_043630_030 Hb_006120_210 Hb_006120_210 Hb_002518_220--Hb_006120_210 Hb_012539_100 Hb_012539_100 Hb_002518_220--Hb_012539_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.144113 1.2867 2.92739 3.33667 0.1 0.0143851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0359614 0.0141487 0.080891 0.584394 1.50318

CAGE analysis