Hb_028008_040

Information

Type -
Description -
Location Contig28008: 73015-84908
Sequence    

Annotation

kegg
ID rcu:RCOM_1266080
description hypothetical protein
nr
ID XP_002530543.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8IXU6
description Solute carrier family 35 member F2 OS=Homo sapiens GN=SLC35F2 PE=1 SV=1
trembl
ID B9SX24
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1266080 PE=4 SV=1
Gene Ontology
ID GO:0016021
description solute carrier family 35 member f1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29258: 72953-84747 , PASA_asmbl_29259: 76221-84747 , PASA_asmbl_29260: 78673-78988 , PASA_asmbl_29262: 75847-76059 , PASA_asmbl_29264: 74978-75315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028008_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003580_050 0.0782080371 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
3 Hb_002078_390 0.0917752992 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
4 Hb_004696_010 0.0946137374 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
5 Hb_001936_190 0.0947858754 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
6 Hb_012404_020 0.0972657614 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005365_010 0.0973152119 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
8 Hb_039075_020 0.0989743908 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
9 Hb_003266_090 0.1016696559 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
10 Hb_005730_110 0.1019350293 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
11 Hb_002311_280 0.1020655421 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
12 Hb_005568_020 0.105848467 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
13 Hb_000718_060 0.1060603948 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
14 Hb_007270_020 0.1071869048 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
15 Hb_128196_010 0.1076924631 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000212_410 0.1099557866 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
17 Hb_000977_030 0.1111027823 - - unnamed protein product [Vitis vinifera]
18 Hb_000617_330 0.1112773652 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
19 Hb_022092_110 0.1124094803 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
20 Hb_006922_020 0.1124239791 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]

Gene co-expression network

sample Hb_028008_040 Hb_028008_040 Hb_003580_050 Hb_003580_050 Hb_028008_040--Hb_003580_050 Hb_002078_390 Hb_002078_390 Hb_028008_040--Hb_002078_390 Hb_004696_010 Hb_004696_010 Hb_028008_040--Hb_004696_010 Hb_001936_190 Hb_001936_190 Hb_028008_040--Hb_001936_190 Hb_012404_020 Hb_012404_020 Hb_028008_040--Hb_012404_020 Hb_005365_010 Hb_005365_010 Hb_028008_040--Hb_005365_010 Hb_000977_030 Hb_000977_030 Hb_003580_050--Hb_000977_030 Hb_000996_030 Hb_000996_030 Hb_003580_050--Hb_000996_030 Hb_003580_050--Hb_004696_010 Hb_002724_010 Hb_002724_010 Hb_003580_050--Hb_002724_010 Hb_004218_200 Hb_004218_200 Hb_003580_050--Hb_004218_200 Hb_005568_020 Hb_005568_020 Hb_002078_390--Hb_005568_020 Hb_000465_020 Hb_000465_020 Hb_002078_390--Hb_000465_020 Hb_000243_060 Hb_000243_060 Hb_002078_390--Hb_000243_060 Hb_000417_050 Hb_000417_050 Hb_002078_390--Hb_000417_050 Hb_002311_280 Hb_002311_280 Hb_002078_390--Hb_002311_280 Hb_011918_070 Hb_011918_070 Hb_004696_010--Hb_011918_070 Hb_003835_080 Hb_003835_080 Hb_004696_010--Hb_003835_080 Hb_001541_130 Hb_001541_130 Hb_004696_010--Hb_001541_130 Hb_001159_230 Hb_001159_230 Hb_004696_010--Hb_001159_230 Hb_000922_160 Hb_000922_160 Hb_001936_190--Hb_000922_160 Hb_005725_240 Hb_005725_240 Hb_001936_190--Hb_005725_240 Hb_004531_170 Hb_004531_170 Hb_001936_190--Hb_004531_170 Hb_001936_190--Hb_003580_050 Hb_001936_190--Hb_005365_010 Hb_070498_010 Hb_070498_010 Hb_012404_020--Hb_070498_010 Hb_002301_400 Hb_002301_400 Hb_012404_020--Hb_002301_400 Hb_128196_010 Hb_128196_010 Hb_012404_020--Hb_128196_010 Hb_005730_110 Hb_005730_110 Hb_012404_020--Hb_005730_110 Hb_001366_290 Hb_001366_290 Hb_012404_020--Hb_001366_290 Hb_001629_120 Hb_001629_120 Hb_005365_010--Hb_001629_120 Hb_000173_270 Hb_000173_270 Hb_005365_010--Hb_000173_270 Hb_000818_090 Hb_000818_090 Hb_005365_010--Hb_000818_090 Hb_007270_020 Hb_007270_020 Hb_005365_010--Hb_007270_020 Hb_001417_060 Hb_001417_060 Hb_005365_010--Hb_001417_060 Hb_044653_050 Hb_044653_050 Hb_005365_010--Hb_044653_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.07943 11.8878 41.9907 43.7169 0.120178 0.32211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.580938 0.238477 0.11273 6.48197 32.6141

CAGE analysis