Hb_000996_030

Information

Type -
Description -
Location Contig996: 24796-28492
Sequence    

Annotation

kegg
ID rcu:RCOM_1686340
description receptor kinase, putative (EC:1.3.1.74)
nr
ID XP_012086941.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]
swissprot
ID C0LGH8
description Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=2 SV=1
trembl
ID A0A067K0Y0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20615 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at1g63430

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64828: 27007-28094 , PASA_asmbl_64829: 28193-28334
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000996_030 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]
2 Hb_011918_070 0.0689383312 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
3 Hb_070498_010 0.0805168994 - - receptor kinase, putative [Ricinus communis]
4 Hb_003580_050 0.0844286926 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
5 Hb_168918_010 0.1006994243 - - pectin acetylesterase, putative [Ricinus communis]
6 Hb_000977_030 0.1009976263 - - unnamed protein product [Vitis vinifera]
7 Hb_004696_010 0.1056500317 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
8 Hb_003938_230 0.1065138003 - - Potassium transporter, putative [Ricinus communis]
9 Hb_001396_030 0.1078705896 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
10 Hb_033312_070 0.1088935047 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
11 Hb_012404_020 0.110333573 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005542_120 0.1115459341 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
13 Hb_085962_010 0.1120762237 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
14 Hb_015048_020 0.1127417422 - - PREDICTED: myb-like protein D [Jatropha curcas]
15 Hb_000112_080 0.1152175969 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
16 Hb_009767_060 0.1161124163 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
17 Hb_000003_750 0.1161226272 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
18 Hb_002272_120 0.116656048 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
19 Hb_001287_090 0.1186578836 - - Endoglucanase 4 [Aegilops tauschii]
20 Hb_001032_020 0.1193660831 - - ankyrin repeat protein [Bruguiera gymnorhiza]

Gene co-expression network

sample Hb_000996_030 Hb_000996_030 Hb_011918_070 Hb_011918_070 Hb_000996_030--Hb_011918_070 Hb_070498_010 Hb_070498_010 Hb_000996_030--Hb_070498_010 Hb_003580_050 Hb_003580_050 Hb_000996_030--Hb_003580_050 Hb_168918_010 Hb_168918_010 Hb_000996_030--Hb_168918_010 Hb_000977_030 Hb_000977_030 Hb_000996_030--Hb_000977_030 Hb_004696_010 Hb_004696_010 Hb_000996_030--Hb_004696_010 Hb_000003_750 Hb_000003_750 Hb_011918_070--Hb_000003_750 Hb_005542_120 Hb_005542_120 Hb_011918_070--Hb_005542_120 Hb_000878_050 Hb_000878_050 Hb_011918_070--Hb_000878_050 Hb_011918_070--Hb_004696_010 Hb_000735_020 Hb_000735_020 Hb_011918_070--Hb_000735_020 Hb_128196_010 Hb_128196_010 Hb_070498_010--Hb_128196_010 Hb_002301_400 Hb_002301_400 Hb_070498_010--Hb_002301_400 Hb_012404_020 Hb_012404_020 Hb_070498_010--Hb_012404_020 Hb_070498_010--Hb_011918_070 Hb_070498_010--Hb_000003_750 Hb_028008_040 Hb_028008_040 Hb_003580_050--Hb_028008_040 Hb_003580_050--Hb_000977_030 Hb_003580_050--Hb_004696_010 Hb_002724_010 Hb_002724_010 Hb_003580_050--Hb_002724_010 Hb_004218_200 Hb_004218_200 Hb_003580_050--Hb_004218_200 Hb_001514_030 Hb_001514_030 Hb_168918_010--Hb_001514_030 Hb_007218_040 Hb_007218_040 Hb_168918_010--Hb_007218_040 Hb_003666_070 Hb_003666_070 Hb_168918_010--Hb_003666_070 Hb_004122_010 Hb_004122_010 Hb_168918_010--Hb_004122_010 Hb_005976_110 Hb_005976_110 Hb_168918_010--Hb_005976_110 Hb_004037_040 Hb_004037_040 Hb_168918_010--Hb_004037_040 Hb_026240_020 Hb_026240_020 Hb_000977_030--Hb_026240_020 Hb_000290_030 Hb_000290_030 Hb_000977_030--Hb_000290_030 Hb_000162_200 Hb_000162_200 Hb_000977_030--Hb_000162_200 Hb_005892_040 Hb_005892_040 Hb_000977_030--Hb_005892_040 Hb_000977_030--Hb_002724_010 Hb_004696_010--Hb_028008_040 Hb_003835_080 Hb_003835_080 Hb_004696_010--Hb_003835_080 Hb_001541_130 Hb_001541_130 Hb_004696_010--Hb_001541_130 Hb_001159_230 Hb_001159_230 Hb_004696_010--Hb_001159_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0495016 1.08119 7.51325 9.51396 0.129133 0.2472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0197627 0 1.78652 5.62152

CAGE analysis