Hb_005976_110

Information

Type -
Description -
Location Contig5976: 96551-97753
Sequence    

Annotation

kegg
ID rcu:RCOM_1408320
description hypothetical protein
nr
ID XP_012079231.1
description PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12395 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50416: 97864-98170
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005976_110 0.0 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
2 Hb_001544_090 0.0643363612 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
3 Hb_004435_020 0.0711783451 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
4 Hb_001095_020 0.0781424638 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
5 Hb_000878_050 0.0814529614 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
6 Hb_000680_170 0.086636687 - - hypothetical protein JCGZ_24789 [Jatropha curcas]
7 Hb_000032_420 0.0876079118 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
8 Hb_001674_010 0.0884155257 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
9 Hb_007617_010 0.089396049 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
10 Hb_001080_190 0.0907693791 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
11 Hb_007811_020 0.0914624215 - - PREDICTED: expansin-A6 [Jatropha curcas]
12 Hb_001186_100 0.0939993291 - - PREDICTED: uncharacterized protein LOC105640806 isoform X1 [Jatropha curcas]
13 Hb_001541_130 0.0950475892 - - GDSL esterase/lipase [Morus notabilis]
14 Hb_168918_010 0.0950485366 - - pectin acetylesterase, putative [Ricinus communis]
15 Hb_005496_040 0.0989881417 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
16 Hb_001159_230 0.0991702044 - - Kinesin heavy chain, putative [Ricinus communis]
17 Hb_011918_070 0.102016355 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
18 Hb_004696_010 0.1028524745 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
19 Hb_004117_090 0.1031917547 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
20 Hb_000392_110 0.1041701819 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005976_110 Hb_005976_110 Hb_001544_090 Hb_001544_090 Hb_005976_110--Hb_001544_090 Hb_004435_020 Hb_004435_020 Hb_005976_110--Hb_004435_020 Hb_001095_020 Hb_001095_020 Hb_005976_110--Hb_001095_020 Hb_000878_050 Hb_000878_050 Hb_005976_110--Hb_000878_050 Hb_000680_170 Hb_000680_170 Hb_005976_110--Hb_000680_170 Hb_000032_420 Hb_000032_420 Hb_005976_110--Hb_000032_420 Hb_001080_190 Hb_001080_190 Hb_001544_090--Hb_001080_190 Hb_001674_010 Hb_001674_010 Hb_001544_090--Hb_001674_010 Hb_001544_090--Hb_001095_020 Hb_001544_090--Hb_000032_420 Hb_007617_010 Hb_007617_010 Hb_001544_090--Hb_007617_010 Hb_004435_020--Hb_000878_050 Hb_010407_130 Hb_010407_130 Hb_004435_020--Hb_010407_130 Hb_000103_450 Hb_000103_450 Hb_004435_020--Hb_000103_450 Hb_004435_020--Hb_001095_020 Hb_007811_020 Hb_007811_020 Hb_004435_020--Hb_007811_020 Hb_001095_020--Hb_001674_010 Hb_002150_090 Hb_002150_090 Hb_001095_020--Hb_002150_090 Hb_000028_190 Hb_000028_190 Hb_001095_020--Hb_000028_190 Hb_007163_100 Hb_007163_100 Hb_001095_020--Hb_007163_100 Hb_001541_130 Hb_001541_130 Hb_001095_020--Hb_001541_130 Hb_005542_120 Hb_005542_120 Hb_000878_050--Hb_005542_120 Hb_000392_110 Hb_000392_110 Hb_000878_050--Hb_000392_110 Hb_000003_280 Hb_000003_280 Hb_000878_050--Hb_000003_280 Hb_004223_060 Hb_004223_060 Hb_000878_050--Hb_004223_060 Hb_007904_280 Hb_007904_280 Hb_000878_050--Hb_007904_280 Hb_000680_170--Hb_000032_420 Hb_017383_010 Hb_017383_010 Hb_000680_170--Hb_017383_010 Hb_010449_010 Hb_010449_010 Hb_000680_170--Hb_010449_010 Hb_000680_170--Hb_001674_010 Hb_000680_170--Hb_001095_020 Hb_000032_420--Hb_010449_010 Hb_000032_420--Hb_017383_010 Hb_000996_070 Hb_000996_070 Hb_000032_420--Hb_000996_070 Hb_015048_020 Hb_015048_020 Hb_000032_420--Hb_015048_020 Hb_000441_130 Hb_000441_130 Hb_000032_420--Hb_000441_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0929213 0.403753 3.4638 4.4284 0.016593 0.0311275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0318182 0.0591981 0.293145 2.63435

CAGE analysis