Hb_000103_450

Information

Type -
Description -
Location Contig103: 388281-389576
Sequence    

Annotation

kegg
ID tcc:TCM_020730
description Uncharacterized protein isoform 1
nr
ID XP_012069934.1
description PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZ87
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02246 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01243: 388714-389860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_450 0.0 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
2 Hb_010407_130 0.0461894618 - - hypothetical protein POPTR_0008s16680g [Populus trichocarpa]
3 Hb_053264_010 0.0661283905 - - beta glucosidase [Hevea brasiliensis]
4 Hb_006846_040 0.0706413108 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
5 Hb_004435_020 0.0713176185 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
6 Hb_001047_090 0.0767972094 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
7 Hb_012653_050 0.0772538596 - - hypothetical protein RCOM_0460020 [Ricinus communis]
8 Hb_004202_020 0.0778933761 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010883_170 0.0795518736 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
10 Hb_000140_320 0.0808471607 - - delta-8 sphingolipid desaturase [Vernicia fordii]
11 Hb_010962_020 0.0814765138 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
12 Hb_000003_280 0.0824673733 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000878_050 0.0831658502 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
14 Hb_000483_450 0.0832859035 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
15 Hb_000392_110 0.0832921072 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_002471_130 0.0843572807 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
17 Hb_004223_060 0.0864176348 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
18 Hb_000003_370 0.0866616045 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
19 Hb_001545_020 0.0936657931 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X5 [Populus euphratica]
20 Hb_000028_190 0.0943111255 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]

Gene co-expression network

sample Hb_000103_450 Hb_000103_450 Hb_010407_130 Hb_010407_130 Hb_000103_450--Hb_010407_130 Hb_053264_010 Hb_053264_010 Hb_000103_450--Hb_053264_010 Hb_006846_040 Hb_006846_040 Hb_000103_450--Hb_006846_040 Hb_004435_020 Hb_004435_020 Hb_000103_450--Hb_004435_020 Hb_001047_090 Hb_001047_090 Hb_000103_450--Hb_001047_090 Hb_012653_050 Hb_012653_050 Hb_000103_450--Hb_012653_050 Hb_010407_130--Hb_004435_020 Hb_010407_130--Hb_006846_040 Hb_000003_280 Hb_000003_280 Hb_010407_130--Hb_000003_280 Hb_000392_110 Hb_000392_110 Hb_010407_130--Hb_000392_110 Hb_000483_450 Hb_000483_450 Hb_010407_130--Hb_000483_450 Hb_000903_040 Hb_000903_040 Hb_053264_010--Hb_000903_040 Hb_053264_010--Hb_006846_040 Hb_010962_020 Hb_010962_020 Hb_053264_010--Hb_010962_020 Hb_053264_010--Hb_000003_280 Hb_053264_010--Hb_001047_090 Hb_006846_040--Hb_001047_090 Hb_138585_010 Hb_138585_010 Hb_006846_040--Hb_138585_010 Hb_006846_040--Hb_010962_020 Hb_006846_040--Hb_000903_040 Hb_000878_050 Hb_000878_050 Hb_004435_020--Hb_000878_050 Hb_005976_110 Hb_005976_110 Hb_004435_020--Hb_005976_110 Hb_001095_020 Hb_001095_020 Hb_004435_020--Hb_001095_020 Hb_007811_020 Hb_007811_020 Hb_004435_020--Hb_007811_020 Hb_001047_090--Hb_010962_020 Hb_004202_020 Hb_004202_020 Hb_001047_090--Hb_004202_020 Hb_002902_060 Hb_002902_060 Hb_001047_090--Hb_002902_060 Hb_001047_090--Hb_000392_110 Hb_010883_170 Hb_010883_170 Hb_012653_050--Hb_010883_170 Hb_000816_140 Hb_000816_140 Hb_012653_050--Hb_000816_140 Hb_012653_050--Hb_000483_450 Hb_012653_050--Hb_004202_020 Hb_000815_050 Hb_000815_050 Hb_012653_050--Hb_000815_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0890994 0.625026 7.32367 14.9981 0.0629313 0.0427462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.419477 6.90006

CAGE analysis