Hb_000903_040

Information

Type -
Description -
Location Contig903: 118562-120844
Sequence    

Annotation

kegg
ID pop:POPTR_0014s14780g
description POPTRDRAFT_572931; pirin-like family protein
nr
ID XP_012066253.1
description PREDICTED: pirin-like protein [Jatropha curcas]
swissprot
ID Q9SEE4
description Pirin-like protein OS=Solanum lycopersicum PE=2 SV=1
trembl
ID A0A067L6M0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23820 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61972: 118619-119292
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000903_040 0.0 - - PREDICTED: pirin-like protein [Jatropha curcas]
2 Hb_053264_010 0.0614782995 - - beta glucosidase [Hevea brasiliensis]
3 Hb_000417_210 0.0812391058 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000676_230 0.0824787905 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
5 Hb_006846_040 0.0837944287 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
6 Hb_138585_010 0.0879754033 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
7 Hb_009783_010 0.0905447835 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
8 Hb_009023_010 0.0952880533 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
9 Hb_002471_130 0.0958229695 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
10 Hb_000003_280 0.0980281453 - - conserved hypothetical protein [Ricinus communis]
11 Hb_031984_020 0.1016325489 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000103_450 0.1018182442 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
13 Hb_000230_410 0.102033289 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
14 Hb_000364_090 0.1039588951 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]
15 Hb_004032_290 0.1055771788 - - protein binding protein, putative [Ricinus communis]
16 Hb_015561_010 0.1060370978 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010142_060 0.1061545582 - - Blue copper protein precursor, putative [Ricinus communis]
18 Hb_000009_280 0.1064399114 - - Calmodulin, putative [Ricinus communis]
19 Hb_005542_120 0.1066277124 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
20 Hb_004650_120 0.1094275995 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000903_040 Hb_000903_040 Hb_053264_010 Hb_053264_010 Hb_000903_040--Hb_053264_010 Hb_000417_210 Hb_000417_210 Hb_000903_040--Hb_000417_210 Hb_000676_230 Hb_000676_230 Hb_000903_040--Hb_000676_230 Hb_006846_040 Hb_006846_040 Hb_000903_040--Hb_006846_040 Hb_138585_010 Hb_138585_010 Hb_000903_040--Hb_138585_010 Hb_009783_010 Hb_009783_010 Hb_000903_040--Hb_009783_010 Hb_053264_010--Hb_006846_040 Hb_000103_450 Hb_000103_450 Hb_053264_010--Hb_000103_450 Hb_010962_020 Hb_010962_020 Hb_053264_010--Hb_010962_020 Hb_000003_280 Hb_000003_280 Hb_053264_010--Hb_000003_280 Hb_001047_090 Hb_001047_090 Hb_053264_010--Hb_001047_090 Hb_000364_090 Hb_000364_090 Hb_000417_210--Hb_000364_090 Hb_000417_210--Hb_138585_010 Hb_000417_210--Hb_000676_230 Hb_004804_010 Hb_004804_010 Hb_000417_210--Hb_004804_010 Hb_012484_050 Hb_012484_050 Hb_000417_210--Hb_012484_050 Hb_004032_290 Hb_004032_290 Hb_000676_230--Hb_004032_290 Hb_010142_060 Hb_010142_060 Hb_000676_230--Hb_010142_060 Hb_000368_050 Hb_000368_050 Hb_000676_230--Hb_000368_050 Hb_133974_010 Hb_133974_010 Hb_000676_230--Hb_133974_010 Hb_004650_120 Hb_004650_120 Hb_000676_230--Hb_004650_120 Hb_000676_230--Hb_000364_090 Hb_006846_040--Hb_000103_450 Hb_006846_040--Hb_001047_090 Hb_006846_040--Hb_138585_010 Hb_006846_040--Hb_010962_020 Hb_138585_010--Hb_004804_010 Hb_001534_140 Hb_001534_140 Hb_138585_010--Hb_001534_140 Hb_009252_070 Hb_009252_070 Hb_138585_010--Hb_009252_070 Hb_007904_280 Hb_007904_280 Hb_009783_010--Hb_007904_280 Hb_001898_040 Hb_001898_040 Hb_009783_010--Hb_001898_040 Hb_012132_050 Hb_012132_050 Hb_009783_010--Hb_012132_050 Hb_001136_040 Hb_001136_040 Hb_009783_010--Hb_001136_040 Hb_001136_160 Hb_001136_160 Hb_009783_010--Hb_001136_160 Hb_007185_050 Hb_007185_050 Hb_009783_010--Hb_007185_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.255147 1.29429 3.55937 0.0490068 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.200688 1.88139

CAGE analysis