Hb_012484_050

Information

Type -
Description -
Location Contig12484: 56723-65091
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16800g
description kinesin motor family protein
nr
ID XP_012078486.1
description PREDICTED: kinesin KP1 [Jatropha curcas]
swissprot
ID Q8W1Y3
description Kinesin KP1 OS=Arabidopsis thaliana GN=KP1 PE=1 SV=2
trembl
ID B9N5N8
description Kinesin-like protein OS=Populus trichocarpa GN=POPTR_0011s16800g PE=3 SV=1
Gene Ontology
ID GO:0005739
description kinesin kp1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07535: 56464-57268 , PASA_asmbl_07536: 57648-58781 , PASA_asmbl_07537: 60120-60515 , PASA_asmbl_07538: 60872-62053 , PASA_asmbl_07539: 65197-65394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012484_050 0.0 - - PREDICTED: kinesin KP1 [Jatropha curcas]
2 Hb_001951_080 0.0795587476 - - O-acetyltransferase, putative [Ricinus communis]
3 Hb_007163_100 0.0835704553 - - BnaC03g52280D [Brassica napus]
4 Hb_012098_160 0.0849310604 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
5 Hb_001512_130 0.090374818 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
6 Hb_000012_330 0.0910219907 - - pollen specific protein sf21, putative [Ricinus communis]
7 Hb_001486_280 0.0920353171 - - hypothetical protein RCOM_1321910 [Ricinus communis]
8 Hb_000417_210 0.0925760935 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_015561_010 0.0969346906 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001032_020 0.097282591 - - ankyrin repeat protein [Bruguiera gymnorhiza]
11 Hb_005295_020 0.0985731865 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
12 Hb_003835_080 0.1027957497 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
13 Hb_000270_380 0.1035213516 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
14 Hb_001541_130 0.1036909883 - - GDSL esterase/lipase [Morus notabilis]
15 Hb_000904_120 0.1037931796 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004696_010 0.1056244506 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
17 Hb_009023_010 0.1068632945 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
18 Hb_002572_040 0.107475022 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
19 Hb_005784_010 0.1096216973 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
20 Hb_005694_160 0.1098536422 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012484_050 Hb_012484_050 Hb_001951_080 Hb_001951_080 Hb_012484_050--Hb_001951_080 Hb_007163_100 Hb_007163_100 Hb_012484_050--Hb_007163_100 Hb_012098_160 Hb_012098_160 Hb_012484_050--Hb_012098_160 Hb_001512_130 Hb_001512_130 Hb_012484_050--Hb_001512_130 Hb_000012_330 Hb_000012_330 Hb_012484_050--Hb_000012_330 Hb_001486_280 Hb_001486_280 Hb_012484_050--Hb_001486_280 Hb_005784_010 Hb_005784_010 Hb_001951_080--Hb_005784_010 Hb_000345_550 Hb_000345_550 Hb_001951_080--Hb_000345_550 Hb_001951_080--Hb_001486_280 Hb_003097_160 Hb_003097_160 Hb_001951_080--Hb_003097_160 Hb_003125_210 Hb_003125_210 Hb_001951_080--Hb_003125_210 Hb_002150_090 Hb_002150_090 Hb_007163_100--Hb_002150_090 Hb_008054_030 Hb_008054_030 Hb_007163_100--Hb_008054_030 Hb_007163_100--Hb_012098_160 Hb_000028_190 Hb_000028_190 Hb_007163_100--Hb_000028_190 Hb_003339_010 Hb_003339_010 Hb_007163_100--Hb_003339_010 Hb_001095_020 Hb_001095_020 Hb_007163_100--Hb_001095_020 Hb_000270_380 Hb_000270_380 Hb_012098_160--Hb_000270_380 Hb_009023_010 Hb_009023_010 Hb_012098_160--Hb_009023_010 Hb_012098_160--Hb_001486_280 Hb_000904_120 Hb_000904_120 Hb_012098_160--Hb_000904_120 Hb_015561_010 Hb_015561_010 Hb_012098_160--Hb_015561_010 Hb_001512_130--Hb_015561_010 Hb_002062_010 Hb_002062_010 Hb_001512_130--Hb_002062_010 Hb_000017_180 Hb_000017_180 Hb_001512_130--Hb_000017_180 Hb_136408_040 Hb_136408_040 Hb_001512_130--Hb_136408_040 Hb_005656_120 Hb_005656_120 Hb_001512_130--Hb_005656_120 Hb_001512_130--Hb_009023_010 Hb_000622_050 Hb_000622_050 Hb_000012_330--Hb_000622_050 Hb_000012_330--Hb_012098_160 Hb_003835_080 Hb_003835_080 Hb_000012_330--Hb_003835_080 Hb_005725_240 Hb_005725_240 Hb_000012_330--Hb_005725_240 Hb_000012_330--Hb_001486_280 Hb_001486_280--Hb_000270_380 Hb_001486_280--Hb_009023_010 Hb_002485_010 Hb_002485_010 Hb_001486_280--Hb_002485_010 Hb_001486_280--Hb_000904_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.170443 0.840922 4.03456 7.63072 0.07636 0.104865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.673026 5.84291

CAGE analysis