Hb_000622_050

Information

Type -
Description -
Location Contig622: 69078-72239
Sequence    

Annotation

kegg
ID rcu:RCOM_0237040
description hypothetical protein
nr
ID XP_002533910.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q84JH9
description Protein trichome birefringence-like 25 OS=Arabidopsis thaliana GN=TBL25 PE=2 SV=1
trembl
ID B9T6P1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0237040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51544: 68887-69249 , PASA_asmbl_51545: 70741-71062
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000012_330 0.0541779045 - - pollen specific protein sf21, putative [Ricinus communis]
3 Hb_000976_400 0.0875962199 - - synaptotagmin, putative [Ricinus communis]
4 Hb_004220_010 0.0879623745 - - PREDICTED: uncharacterized protein LOC105642366 [Jatropha curcas]
5 Hb_012098_160 0.0919937366 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
6 Hb_005725_240 0.0925063255 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
7 Hb_004531_170 0.0949258215 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
8 Hb_002066_110 0.0998750759 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
9 Hb_000680_170 0.1020207091 - - hypothetical protein JCGZ_24789 [Jatropha curcas]
10 Hb_001486_280 0.1046027914 - - hypothetical protein RCOM_1321910 [Ricinus communis]
11 Hb_003835_080 0.1059148817 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
12 Hb_000904_120 0.1088469779 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005694_160 0.1091239508 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001032_020 0.1101758309 - - ankyrin repeat protein [Bruguiera gymnorhiza]
15 Hb_000270_380 0.1102507436 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
16 Hb_084303_010 0.11107463 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005976_110 0.1119765504 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
18 Hb_000417_050 0.1121190962 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
19 Hb_012484_050 0.1138428012 - - PREDICTED: kinesin KP1 [Jatropha curcas]
20 Hb_000617_330 0.1145426831 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]

Gene co-expression network

sample Hb_000622_050 Hb_000622_050 Hb_000012_330 Hb_000012_330 Hb_000622_050--Hb_000012_330 Hb_000976_400 Hb_000976_400 Hb_000622_050--Hb_000976_400 Hb_004220_010 Hb_004220_010 Hb_000622_050--Hb_004220_010 Hb_012098_160 Hb_012098_160 Hb_000622_050--Hb_012098_160 Hb_005725_240 Hb_005725_240 Hb_000622_050--Hb_005725_240 Hb_004531_170 Hb_004531_170 Hb_000622_050--Hb_004531_170 Hb_000012_330--Hb_012098_160 Hb_003835_080 Hb_003835_080 Hb_000012_330--Hb_003835_080 Hb_012484_050 Hb_012484_050 Hb_000012_330--Hb_012484_050 Hb_000012_330--Hb_005725_240 Hb_001486_280 Hb_001486_280 Hb_000012_330--Hb_001486_280 Hb_000976_400--Hb_005725_240 Hb_000212_410 Hb_000212_410 Hb_000976_400--Hb_000212_410 Hb_001148_110 Hb_001148_110 Hb_000976_400--Hb_001148_110 Hb_000816_240 Hb_000816_240 Hb_000976_400--Hb_000816_240 Hb_000976_400--Hb_004220_010 Hb_001942_010 Hb_001942_010 Hb_004220_010--Hb_001942_010 Hb_003581_230 Hb_003581_230 Hb_004220_010--Hb_003581_230 Hb_000904_120 Hb_000904_120 Hb_004220_010--Hb_000904_120 Hb_084303_010 Hb_084303_010 Hb_004220_010--Hb_084303_010 Hb_000270_380 Hb_000270_380 Hb_012098_160--Hb_000270_380 Hb_007163_100 Hb_007163_100 Hb_012098_160--Hb_007163_100 Hb_009023_010 Hb_009023_010 Hb_012098_160--Hb_009023_010 Hb_012098_160--Hb_001486_280 Hb_012098_160--Hb_000904_120 Hb_015561_010 Hb_015561_010 Hb_012098_160--Hb_015561_010 Hb_005725_240--Hb_000212_410 Hb_005725_240--Hb_084303_010 Hb_005725_240--Hb_000816_240 Hb_000982_100 Hb_000982_100 Hb_004531_170--Hb_000982_100 Hb_001936_190 Hb_001936_190 Hb_004531_170--Hb_001936_190 Hb_004117_370 Hb_004117_370 Hb_004531_170--Hb_004117_370 Hb_004531_170--Hb_000012_330 Hb_000181_330 Hb_000181_330 Hb_004531_170--Hb_000181_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.858216 4.01607 19.9996 22.9298 0.721532 0.25632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.122749 0.144856 0.136157 1.32961 21.5805

CAGE analysis