Hb_000816_240

Information

Type -
Description -
Location Contig816: 242304-246464
Sequence    

Annotation

kegg
ID rcu:RCOM_0689450
description dual specificity protein phosphatase, putative
nr
ID XP_012091174.1
description PREDICTED: phosphoglucan phosphatase LSF2, chloroplastic [Jatropha curcas]
swissprot
ID Q9SRK5
description Phosphoglucan phosphatase LSF2, chloroplastic OS=Arabidopsis thaliana GN=LSF2 PE=1 SV=1
trembl
ID A0A067JCZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03343 PE=4 SV=1
Gene Ontology
ID GO:0008138
description phosphoglucan phosphatase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59424: 243338-245516 , PASA_asmbl_59425: 243406-246343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_240 0.0 - - PREDICTED: phosphoglucan phosphatase LSF2, chloroplastic [Jatropha curcas]
2 Hb_137222_010 0.0855855775 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
3 Hb_005725_240 0.0981153665 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
4 Hb_004096_210 0.1003535075 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
5 Hb_000976_400 0.1026617503 - - synaptotagmin, putative [Ricinus communis]
6 Hb_069696_020 0.1063090496 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
7 Hb_006075_030 0.1098041058 - - PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]
8 Hb_000424_130 0.1105342522 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
9 Hb_005018_010 0.1109103792 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
10 Hb_029920_010 0.1118175435 - - pepsin A, putative [Ricinus communis]
11 Hb_000984_160 0.112256577 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
12 Hb_000951_150 0.1132141188 - - hypothetical protein POPTR_0015s05850g [Populus trichocarpa]
13 Hb_001491_070 0.1134458051 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
14 Hb_000922_200 0.1148726872 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
15 Hb_000212_410 0.1159732227 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
16 Hb_000020_090 0.1165528399 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
17 Hb_000618_110 0.1166612697 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
18 Hb_000977_020 0.1189397605 - - beta-hexosaminidase, putative [Ricinus communis]
19 Hb_006831_090 0.11994867 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
20 Hb_172426_070 0.1206850931 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000816_240 Hb_000816_240 Hb_137222_010 Hb_137222_010 Hb_000816_240--Hb_137222_010 Hb_005725_240 Hb_005725_240 Hb_000816_240--Hb_005725_240 Hb_004096_210 Hb_004096_210 Hb_000816_240--Hb_004096_210 Hb_000976_400 Hb_000976_400 Hb_000816_240--Hb_000976_400 Hb_069696_020 Hb_069696_020 Hb_000816_240--Hb_069696_020 Hb_006075_030 Hb_006075_030 Hb_000816_240--Hb_006075_030 Hb_029920_010 Hb_029920_010 Hb_137222_010--Hb_029920_010 Hb_000300_110 Hb_000300_110 Hb_137222_010--Hb_000300_110 Hb_000424_130 Hb_000424_130 Hb_137222_010--Hb_000424_130 Hb_000327_260 Hb_000327_260 Hb_137222_010--Hb_000327_260 Hb_127263_010 Hb_127263_010 Hb_137222_010--Hb_127263_010 Hb_005725_240--Hb_000976_400 Hb_000212_410 Hb_000212_410 Hb_005725_240--Hb_000212_410 Hb_084303_010 Hb_084303_010 Hb_005725_240--Hb_084303_010 Hb_000622_050 Hb_000622_050 Hb_005725_240--Hb_000622_050 Hb_000012_330 Hb_000012_330 Hb_005725_240--Hb_000012_330 Hb_000618_110 Hb_000618_110 Hb_004096_210--Hb_000618_110 Hb_009838_070 Hb_009838_070 Hb_004096_210--Hb_009838_070 Hb_009393_130 Hb_009393_130 Hb_004096_210--Hb_009393_130 Hb_004096_210--Hb_000327_260 Hb_000866_020 Hb_000866_020 Hb_004096_210--Hb_000866_020 Hb_000976_400--Hb_000622_050 Hb_000976_400--Hb_000212_410 Hb_001148_110 Hb_001148_110 Hb_000976_400--Hb_001148_110 Hb_004220_010 Hb_004220_010 Hb_000976_400--Hb_004220_010 Hb_131876_010 Hb_131876_010 Hb_069696_020--Hb_131876_010 Hb_002073_150 Hb_002073_150 Hb_069696_020--Hb_002073_150 Hb_000627_050 Hb_000627_050 Hb_069696_020--Hb_000627_050 Hb_000984_160 Hb_000984_160 Hb_069696_020--Hb_000984_160 Hb_000140_460 Hb_000140_460 Hb_069696_020--Hb_000140_460 Hb_030827_010 Hb_030827_010 Hb_069696_020--Hb_030827_010 Hb_002374_180 Hb_002374_180 Hb_006075_030--Hb_002374_180 Hb_006831_090 Hb_006831_090 Hb_006075_030--Hb_006831_090 Hb_000329_780 Hb_000329_780 Hb_006075_030--Hb_000329_780 Hb_002600_170 Hb_002600_170 Hb_006075_030--Hb_002600_170 Hb_005532_030 Hb_005532_030 Hb_006075_030--Hb_005532_030 Hb_002572_040 Hb_002572_040 Hb_006075_030--Hb_002572_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12467 1.03119 13.2046 11.7923 0.0285536 0.314137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.16787 0.316951 0 1.90997 17.3584

CAGE analysis