Hb_002073_150

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig2073: 101189-103126
Sequence    

Annotation

kegg
ID rcu:RCOM_0699450
description transcription factor, putative
nr
ID XP_012091999.1
description PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
swissprot
ID Q2V9B0
description Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A067JMP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21741 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb1r1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21377: 101152-103059 , PASA_asmbl_21378: 101185-103059 , PASA_asmbl_21379: 101265-101394
cDNA
(Sanger)
(ID:Location)		 007_H18.ab1: 101152-102230 , 026_C24.ab1: 101152-102161 , 041_P13.ab1: 101265-101394

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002073_150 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
2 Hb_011104_020 0.0489993042 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
3 Hb_012389_010 0.0492835469 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
4 Hb_001248_070 0.050866893 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
5 Hb_131876_010 0.0634512462 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like isoform X1 [Jatropha curcas]
6 Hb_000483_430 0.0662189221 - - -
7 Hb_069696_020 0.0706791983 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
8 Hb_004994_030 0.0759387879 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
9 Hb_000140_460 0.0775846501 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
10 Hb_000041_210 0.0802018868 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
11 Hb_000608_290 0.0826056015 - - thioredoxin f-type, putative [Ricinus communis]
12 Hb_001051_010 0.0831033591 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
13 Hb_000705_040 0.0836759705 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000984_160 0.0844202892 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
15 Hb_000675_010 0.0846105182 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
16 Hb_001321_010 0.0864275822 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
17 Hb_000270_090 0.0891853563 - - nitrate transporter, putative [Ricinus communis]
18 Hb_000627_050 0.0896292678 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
19 Hb_000968_010 0.0959014404 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
20 Hb_018591_020 0.0965721634 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002073_150 Hb_002073_150 Hb_011104_020 Hb_011104_020 Hb_002073_150--Hb_011104_020 Hb_012389_010 Hb_012389_010 Hb_002073_150--Hb_012389_010 Hb_001248_070 Hb_001248_070 Hb_002073_150--Hb_001248_070 Hb_131876_010 Hb_131876_010 Hb_002073_150--Hb_131876_010 Hb_000483_430 Hb_000483_430 Hb_002073_150--Hb_000483_430 Hb_069696_020 Hb_069696_020 Hb_002073_150--Hb_069696_020 Hb_011104_020--Hb_000483_430 Hb_001321_010 Hb_001321_010 Hb_011104_020--Hb_001321_010 Hb_000270_090 Hb_000270_090 Hb_011104_020--Hb_000270_090 Hb_004994_030 Hb_004994_030 Hb_011104_020--Hb_004994_030 Hb_011104_020--Hb_012389_010 Hb_000041_210 Hb_000041_210 Hb_012389_010--Hb_000041_210 Hb_012389_010--Hb_004994_030 Hb_012389_010--Hb_131876_010 Hb_000675_010 Hb_000675_010 Hb_012389_010--Hb_000675_010 Hb_000608_290 Hb_000608_290 Hb_001248_070--Hb_000608_290 Hb_000705_040 Hb_000705_040 Hb_001248_070--Hb_000705_040 Hb_001248_070--Hb_011104_020 Hb_001248_070--Hb_069696_020 Hb_001248_070--Hb_131876_010 Hb_131876_010--Hb_069696_020 Hb_000984_160 Hb_000984_160 Hb_131876_010--Hb_000984_160 Hb_131876_010--Hb_000041_210 Hb_000627_050 Hb_000627_050 Hb_131876_010--Hb_000627_050 Hb_000483_430--Hb_012389_010 Hb_000483_430--Hb_000041_210 Hb_000483_430--Hb_004994_030 Hb_000023_130 Hb_000023_130 Hb_000483_430--Hb_000023_130 Hb_069696_020--Hb_000627_050 Hb_069696_020--Hb_000984_160 Hb_000140_460 Hb_000140_460 Hb_069696_020--Hb_000140_460 Hb_030827_010 Hb_030827_010 Hb_069696_020--Hb_030827_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0140804 10.3803 43.9554 27.1907 0.0531034 0.0221518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.154817 0.0609042 0 8.65282 70.0535

CAGE analysis