Hb_000984_160

Information

Type -
Description -
Location Contig984: 216653-221029
Sequence    

Annotation

kegg
ID rcu:RCOM_1584750
description amino acid transporter, putative
nr
ID XP_012068117.1
description PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
swissprot
ID P92934
description Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1
trembl
ID A0A067KZB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15958 PE=4 SV=1
Gene Ontology
ID GO:0016021
description amino acid permease 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64561: 217036-220846 , PASA_asmbl_64562: 217036-218128 , PASA_asmbl_64563: 218968-219100 , PASA_asmbl_64564: 219186-219320
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000984_160 0.0 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
2 Hb_005569_010 0.0533349119 - - Heme-binding protein, putative [Ricinus communis]
3 Hb_131876_010 0.0692518747 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like isoform X1 [Jatropha curcas]
4 Hb_004052_030 0.0704709089 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
5 Hb_069696_020 0.0735891057 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
6 Hb_001946_120 0.0767863727 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
7 Hb_000847_030 0.079111447 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
8 Hb_011214_130 0.0804685488 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 [Jatropha curcas]
9 Hb_005694_120 0.0811426286 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
10 Hb_000140_460 0.0817714853 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
11 Hb_004835_020 0.0828363784 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
12 Hb_044478_010 0.0833375888 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
13 Hb_002073_150 0.0844202892 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
14 Hb_003195_080 0.0848899035 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
15 Hb_012389_010 0.0849833811 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
16 Hb_153258_040 0.092225659 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
17 Hb_000424_140 0.0926072145 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
18 Hb_000076_060 0.0942022158 - - hypothetical protein RCOM_0586940 [Ricinus communis]
19 Hb_006970_030 0.0960644864 - - synaptotagmin, putative [Ricinus communis]
20 Hb_004970_060 0.0970384773 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]

Gene co-expression network

sample Hb_000984_160 Hb_000984_160 Hb_005569_010 Hb_005569_010 Hb_000984_160--Hb_005569_010 Hb_131876_010 Hb_131876_010 Hb_000984_160--Hb_131876_010 Hb_004052_030 Hb_004052_030 Hb_000984_160--Hb_004052_030 Hb_069696_020 Hb_069696_020 Hb_000984_160--Hb_069696_020 Hb_001946_120 Hb_001946_120 Hb_000984_160--Hb_001946_120 Hb_000847_030 Hb_000847_030 Hb_000984_160--Hb_000847_030 Hb_004835_020 Hb_004835_020 Hb_005569_010--Hb_004835_020 Hb_000424_140 Hb_000424_140 Hb_005569_010--Hb_000424_140 Hb_003195_080 Hb_003195_080 Hb_005569_010--Hb_003195_080 Hb_000329_440 Hb_000329_440 Hb_005569_010--Hb_000329_440 Hb_000958_090 Hb_000958_090 Hb_005569_010--Hb_000958_090 Hb_002073_150 Hb_002073_150 Hb_131876_010--Hb_002073_150 Hb_131876_010--Hb_069696_020 Hb_012389_010 Hb_012389_010 Hb_131876_010--Hb_012389_010 Hb_000041_210 Hb_000041_210 Hb_131876_010--Hb_000041_210 Hb_000627_050 Hb_000627_050 Hb_131876_010--Hb_000627_050 Hb_044478_010 Hb_044478_010 Hb_004052_030--Hb_044478_010 Hb_003358_030 Hb_003358_030 Hb_004052_030--Hb_003358_030 Hb_005111_040 Hb_005111_040 Hb_004052_030--Hb_005111_040 Hb_004052_030--Hb_005569_010 Hb_000482_180 Hb_000482_180 Hb_004052_030--Hb_000482_180 Hb_069696_020--Hb_002073_150 Hb_069696_020--Hb_000627_050 Hb_000140_460 Hb_000140_460 Hb_069696_020--Hb_000140_460 Hb_030827_010 Hb_030827_010 Hb_069696_020--Hb_030827_010 Hb_005694_120 Hb_005694_120 Hb_001946_120--Hb_005694_120 Hb_153258_040 Hb_153258_040 Hb_001946_120--Hb_153258_040 Hb_001007_070 Hb_001007_070 Hb_001946_120--Hb_001007_070 Hb_001946_120--Hb_044478_010 Hb_000099_120 Hb_000099_120 Hb_001946_120--Hb_000099_120 Hb_000847_030--Hb_005694_120 Hb_003018_150 Hb_003018_150 Hb_000847_030--Hb_003018_150 Hb_000618_110 Hb_000618_110 Hb_000847_030--Hb_000618_110 Hb_000847_030--Hb_001946_120 Hb_001210_060 Hb_001210_060 Hb_000847_030--Hb_001210_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.190361 6.54233 39.8385 36.3244 0.106746 0.167637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.306909 0.14086 0.0380361 7.31762 79.4144

CAGE analysis