Hb_003358_030

Information

Type -
Description -
Location Contig3358: 75181-93827
Sequence    

Annotation

kegg
ID pop:POPTR_0007s00720g
description hypothetical protein
nr
ID XP_002529820.1
description ankyrin-kinase, putative [Ricinus communis]
swissprot
ID Q54Y55
description Dual specificity protein kinase shkC OS=Dictyostelium discoideum GN=shkC PE=3 SV=1
trembl
ID A0A067KFW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10660 PE=4 SV=1
Gene Ontology
ID GO:0005886
description serine threonine-protein kinase ctr1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35125: 75492-93846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003358_030 0.0 - - ankyrin-kinase, putative [Ricinus communis]
2 Hb_000608_190 0.0712221626 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
3 Hb_029386_010 0.0727565338 - - RALF-LIKE 27 family protein [Populus trichocarpa]
4 Hb_004052_030 0.0829168498 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
5 Hb_001488_160 0.0876235003 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
6 Hb_000477_090 0.0914790834 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
7 Hb_007620_020 0.0942383426 - - PREDICTED: cationic amino acid transporter 7, chloroplastic-like isoform X1 [Jatropha curcas]
8 Hb_000670_070 0.0981766663 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
9 Hb_048755_030 0.0981961923 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
10 Hb_089124_010 0.1020276688 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
11 Hb_033681_030 0.1065670641 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
12 Hb_005675_030 0.1065818398 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
13 Hb_005539_150 0.1073580885 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Jatropha curcas]
14 Hb_000627_110 0.108213472 - - cellulose synthase, putative [Ricinus communis]
15 Hb_006291_050 0.1086987875 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_004896_030 0.1141704294 - - hypothetical protein VITISV_007475 [Vitis vinifera]
17 Hb_004837_080 0.1150961903 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
18 Hb_000424_140 0.1156418715 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
19 Hb_000482_180 0.1166348176 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
20 Hb_000254_080 0.1171732133 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]

Gene co-expression network

sample Hb_003358_030 Hb_003358_030 Hb_000608_190 Hb_000608_190 Hb_003358_030--Hb_000608_190 Hb_029386_010 Hb_029386_010 Hb_003358_030--Hb_029386_010 Hb_004052_030 Hb_004052_030 Hb_003358_030--Hb_004052_030 Hb_001488_160 Hb_001488_160 Hb_003358_030--Hb_001488_160 Hb_000477_090 Hb_000477_090 Hb_003358_030--Hb_000477_090 Hb_007620_020 Hb_007620_020 Hb_003358_030--Hb_007620_020 Hb_000608_190--Hb_007620_020 Hb_000670_070 Hb_000670_070 Hb_000608_190--Hb_000670_070 Hb_000424_140 Hb_000424_140 Hb_000608_190--Hb_000424_140 Hb_089124_010 Hb_089124_010 Hb_000608_190--Hb_089124_010 Hb_000958_090 Hb_000958_090 Hb_000608_190--Hb_000958_090 Hb_005539_150 Hb_005539_150 Hb_029386_010--Hb_005539_150 Hb_029386_010--Hb_000477_090 Hb_000627_110 Hb_000627_110 Hb_029386_010--Hb_000627_110 Hb_000223_090 Hb_000223_090 Hb_029386_010--Hb_000223_090 Hb_004896_030 Hb_004896_030 Hb_029386_010--Hb_004896_030 Hb_000984_160 Hb_000984_160 Hb_004052_030--Hb_000984_160 Hb_044478_010 Hb_044478_010 Hb_004052_030--Hb_044478_010 Hb_005111_040 Hb_005111_040 Hb_004052_030--Hb_005111_040 Hb_005569_010 Hb_005569_010 Hb_004052_030--Hb_005569_010 Hb_000482_180 Hb_000482_180 Hb_004052_030--Hb_000482_180 Hb_005675_030 Hb_005675_030 Hb_001488_160--Hb_005675_030 Hb_001699_110 Hb_001699_110 Hb_001488_160--Hb_001699_110 Hb_018487_040 Hb_018487_040 Hb_001488_160--Hb_018487_040 Hb_011537_130 Hb_011537_130 Hb_001488_160--Hb_011537_130 Hb_080048_030 Hb_080048_030 Hb_001488_160--Hb_080048_030 Hb_000739_280 Hb_000739_280 Hb_001488_160--Hb_000739_280 Hb_000477_090--Hb_005539_150 Hb_008195_090 Hb_008195_090 Hb_000477_090--Hb_008195_090 Hb_001894_100 Hb_001894_100 Hb_000477_090--Hb_001894_100 Hb_033681_030 Hb_033681_030 Hb_000477_090--Hb_033681_030 Hb_007620_020--Hb_089124_010 Hb_007620_020--Hb_000670_070 Hb_004837_080 Hb_004837_080 Hb_007620_020--Hb_004837_080 Hb_002245_060 Hb_002245_060 Hb_007620_020--Hb_002245_060 Hb_000122_230 Hb_000122_230 Hb_007620_020--Hb_000122_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0137745 0.789179 4.27643 7.61951 0.0318991 0.0194379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0375541 1.36835 19.6236

CAGE analysis