Hb_005539_150

Information

Type -
Description -
Location Contig5539: 89573-90846
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11030g
description POPTRDRAFT_731607; xyloglucan endotransglucosylase/hydrolase protein 33 precursor
nr
ID XP_012085349.1
description PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Jatropha curcas]
swissprot
ID Q8LC45
description Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2
trembl
ID A0A067JRI4
description Xyloglucan endotransglucosylase/hydrolase OS=Jatropha curcas GN=JCGZ_17724 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 33

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48380: 89573-90836
cDNA
(Sanger)
(ID:Location)		 020_O11.ab1: 89573-90605 , 053_N16.ab1: 89603-90523

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_150 0.0 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Jatropha curcas]
2 Hb_000477_090 0.0730682431 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
3 Hb_000654_020 0.0734788235 - - hypothetical protein CICLE_v10006262mg [Citrus clementina]
4 Hb_029386_010 0.0887839222 - - RALF-LIKE 27 family protein [Populus trichocarpa]
5 Hb_002245_060 0.089679339 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
6 Hb_008253_050 0.0905192481 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
7 Hb_000670_070 0.0965370581 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
8 Hb_010883_160 0.1003366875 - - PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]
9 Hb_000265_030 0.103668733 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
10 Hb_001894_100 0.1064697656 - - PREDICTED: kininogen-1-like [Jatropha curcas]
11 Hb_003358_030 0.1073580885 - - ankyrin-kinase, putative [Ricinus communis]
12 Hb_002073_130 0.1086949177 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
13 Hb_000223_090 0.1102898551 - - Blue copper protein precursor, putative [Ricinus communis]
14 Hb_133076_010 0.1126136624 - - PREDICTED: scopoletin glucosyltransferase-like [Populus euphratica]
15 Hb_008441_010 0.1140874812 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_000809_010 0.1151832279 - - hypothetical protein JCGZ_12342 [Jatropha curcas]
17 Hb_007620_020 0.1168187764 - - PREDICTED: cationic amino acid transporter 7, chloroplastic-like isoform X1 [Jatropha curcas]
18 Hb_000122_230 0.1172622242 - - laccase, putative [Ricinus communis]
19 Hb_000608_190 0.1180404356 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
20 Hb_000343_090 0.1184931888 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005539_150 Hb_005539_150 Hb_000477_090 Hb_000477_090 Hb_005539_150--Hb_000477_090 Hb_000654_020 Hb_000654_020 Hb_005539_150--Hb_000654_020 Hb_029386_010 Hb_029386_010 Hb_005539_150--Hb_029386_010 Hb_002245_060 Hb_002245_060 Hb_005539_150--Hb_002245_060 Hb_008253_050 Hb_008253_050 Hb_005539_150--Hb_008253_050 Hb_000670_070 Hb_000670_070 Hb_005539_150--Hb_000670_070 Hb_008195_090 Hb_008195_090 Hb_000477_090--Hb_008195_090 Hb_001894_100 Hb_001894_100 Hb_000477_090--Hb_001894_100 Hb_033681_030 Hb_033681_030 Hb_000477_090--Hb_033681_030 Hb_000477_090--Hb_029386_010 Hb_003358_030 Hb_003358_030 Hb_000477_090--Hb_003358_030 Hb_010883_160 Hb_010883_160 Hb_000654_020--Hb_010883_160 Hb_000809_010 Hb_000809_010 Hb_000654_020--Hb_000809_010 Hb_008441_010 Hb_008441_010 Hb_000654_020--Hb_008441_010 Hb_000654_020--Hb_002245_060 Hb_000402_060 Hb_000402_060 Hb_000654_020--Hb_000402_060 Hb_029386_010--Hb_003358_030 Hb_000627_110 Hb_000627_110 Hb_029386_010--Hb_000627_110 Hb_000223_090 Hb_000223_090 Hb_029386_010--Hb_000223_090 Hb_004896_030 Hb_004896_030 Hb_029386_010--Hb_004896_030 Hb_000122_230 Hb_000122_230 Hb_002245_060--Hb_000122_230 Hb_007620_020 Hb_007620_020 Hb_002245_060--Hb_007620_020 Hb_002245_060--Hb_000670_070 Hb_001408_200 Hb_001408_200 Hb_002245_060--Hb_001408_200 Hb_041139_010 Hb_041139_010 Hb_008253_050--Hb_041139_010 Hb_011618_010 Hb_011618_010 Hb_008253_050--Hb_011618_010 Hb_008253_050--Hb_001894_100 Hb_005348_050 Hb_005348_050 Hb_008253_050--Hb_005348_050 Hb_008253_050--Hb_000223_090 Hb_000608_190 Hb_000608_190 Hb_000670_070--Hb_000608_190 Hb_000424_140 Hb_000424_140 Hb_000670_070--Hb_000424_140 Hb_000670_070--Hb_007620_020 Hb_005842_010 Hb_005842_010 Hb_000670_070--Hb_005842_010 Hb_000670_070--Hb_000654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0732183 1.90388 4.93729 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0395612 0 0.699912 9.31123

CAGE analysis