Hb_000402_060

Information

Type -
Description -
Location Contig402: 84069-88575
Sequence    

Annotation

kegg
ID pop:POPTR_0010s05430g
description POPTRDRAFT_769113; hypothetical protein
nr
ID XP_012085451.1
description PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4C0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17792 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39920: 84015-84168
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000402_060 0.0 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
2 Hb_001408_200 0.0513105982 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
3 Hb_010883_160 0.0712323007 - - PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]
4 Hb_003058_240 0.074749976 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
5 Hb_000654_020 0.0831265519 - - hypothetical protein CICLE_v10006262mg [Citrus clementina]
6 Hb_002809_180 0.0857215618 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
7 Hb_001397_020 0.0865095749 - - cytochrome P450 family protein [Populus trichocarpa]
8 Hb_003152_020 0.0884325965 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
9 Hb_158092_090 0.0941859038 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000103_440 0.0946183204 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
11 Hb_002925_060 0.0950937655 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
12 Hb_000122_230 0.0975698718 - - laccase, putative [Ricinus communis]
13 Hb_002245_060 0.0995604893 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
14 Hb_000809_010 0.1016672335 - - hypothetical protein JCGZ_12342 [Jatropha curcas]
15 Hb_003549_100 0.1018137383 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
16 Hb_001289_070 0.103806037 - - PREDICTED: protein YLS9-like [Jatropha curcas]
17 Hb_007163_110 0.105819476 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
18 Hb_000749_280 0.1072909347 - - PREDICTED: uncharacterized protein LOC105138169 [Populus euphratica]
19 Hb_121624_010 0.1072961979 - - PREDICTED: uncharacterized protein LOC105634410 [Jatropha curcas]
20 Hb_001140_290 0.1081509962 - - hypothetical protein JCGZ_26107 [Jatropha curcas]

Gene co-expression network

sample Hb_000402_060 Hb_000402_060 Hb_001408_200 Hb_001408_200 Hb_000402_060--Hb_001408_200 Hb_010883_160 Hb_010883_160 Hb_000402_060--Hb_010883_160 Hb_003058_240 Hb_003058_240 Hb_000402_060--Hb_003058_240 Hb_000654_020 Hb_000654_020 Hb_000402_060--Hb_000654_020 Hb_002809_180 Hb_002809_180 Hb_000402_060--Hb_002809_180 Hb_001397_020 Hb_001397_020 Hb_000402_060--Hb_001397_020 Hb_002925_060 Hb_002925_060 Hb_001408_200--Hb_002925_060 Hb_000122_230 Hb_000122_230 Hb_001408_200--Hb_000122_230 Hb_003152_020 Hb_003152_020 Hb_001408_200--Hb_003152_020 Hb_001408_200--Hb_001397_020 Hb_001408_200--Hb_003058_240 Hb_010883_160--Hb_000654_020 Hb_010883_160--Hb_001397_020 Hb_000029_210 Hb_000029_210 Hb_010883_160--Hb_000029_210 Hb_003549_100 Hb_003549_100 Hb_010883_160--Hb_003549_100 Hb_000076_240 Hb_000076_240 Hb_010883_160--Hb_000076_240 Hb_000103_440 Hb_000103_440 Hb_003058_240--Hb_000103_440 Hb_001140_290 Hb_001140_290 Hb_003058_240--Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_003058_240--Hb_002151_070 Hb_009476_080 Hb_009476_080 Hb_003058_240--Hb_009476_080 Hb_003058_240--Hb_002809_180 Hb_000809_010 Hb_000809_010 Hb_000654_020--Hb_000809_010 Hb_005539_150 Hb_005539_150 Hb_000654_020--Hb_005539_150 Hb_008441_010 Hb_008441_010 Hb_000654_020--Hb_008441_010 Hb_002245_060 Hb_002245_060 Hb_000654_020--Hb_002245_060 Hb_010172_040 Hb_010172_040 Hb_002809_180--Hb_010172_040 Hb_002809_180--Hb_001397_020 Hb_002809_180--Hb_001140_290 Hb_002809_180--Hb_003549_100 Hb_010589_010 Hb_010589_010 Hb_002809_180--Hb_010589_010 Hb_002809_180--Hb_003152_020 Hb_001397_020--Hb_003549_100 Hb_001397_020--Hb_010589_010 Hb_001397_020--Hb_003152_020 Hb_000002_110 Hb_000002_110 Hb_001397_020--Hb_000002_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.232285 1.79333 9.28663 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.030987 0 0.595558 9.37559

CAGE analysis