Hb_001397_020

Information

Type -
Description -
Location Contig1397: 58884-60545
Sequence    

Annotation

kegg
ID pop:POPTR_0022s00600g
description cytochrome P450 family protein
nr
ID XP_006389525.1
description cytochrome P450 family protein [Populus trichocarpa]
swissprot
ID P93147
description Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata GN=CYP81E1 PE=1 SV=2
trembl
ID U7E1H4
description Cytochrome P450 family protein OS=Populus trichocarpa GN=POPTR_0022s00600g PE=3 SV=1
Gene Ontology
ID GO:0016491
description cytochrome p450 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10787: 59654-60443
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001397_020 0.0 - - cytochrome P450 family protein [Populus trichocarpa]
2 Hb_003549_100 0.0505329012 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
3 Hb_010589_010 0.0511700355 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
4 Hb_002809_180 0.0613381582 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
5 Hb_003152_020 0.062127388 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
6 Hb_010883_160 0.0668394775 - - PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]
7 Hb_000002_110 0.0691523838 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
8 Hb_029587_010 0.0703406879 - - G-type lectin S-receptor-like serine/threonine-protein kinase [Glycine soja]
9 Hb_008518_060 0.0711906601 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
10 Hb_005000_150 0.0738595948 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000076_240 0.0755518733 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
12 Hb_001140_290 0.0755908209 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
13 Hb_000029_210 0.0774095787 - - protein binding protein, putative [Ricinus communis]
14 Hb_001433_090 0.0777364752 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
15 Hb_005183_050 0.0807092489 - - hypothetical protein RCOM_1590900 [Ricinus communis]
16 Hb_001408_200 0.0837237346 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
17 Hb_095744_010 0.085483773 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]
18 Hb_000402_060 0.0865095749 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
19 Hb_132880_010 0.0875783026 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
20 Hb_000017_180 0.0877965793 - - hypothetical protein JCGZ_20551 [Jatropha curcas]

Gene co-expression network

sample Hb_001397_020 Hb_001397_020 Hb_003549_100 Hb_003549_100 Hb_001397_020--Hb_003549_100 Hb_010589_010 Hb_010589_010 Hb_001397_020--Hb_010589_010 Hb_002809_180 Hb_002809_180 Hb_001397_020--Hb_002809_180 Hb_003152_020 Hb_003152_020 Hb_001397_020--Hb_003152_020 Hb_010883_160 Hb_010883_160 Hb_001397_020--Hb_010883_160 Hb_000002_110 Hb_000002_110 Hb_001397_020--Hb_000002_110 Hb_132880_010 Hb_132880_010 Hb_003549_100--Hb_132880_010 Hb_029587_010 Hb_029587_010 Hb_003549_100--Hb_029587_010 Hb_003549_100--Hb_010589_010 Hb_003549_100--Hb_002809_180 Hb_095744_010 Hb_095744_010 Hb_003549_100--Hb_095744_010 Hb_010589_010--Hb_029587_010 Hb_001433_090 Hb_001433_090 Hb_010589_010--Hb_001433_090 Hb_010589_010--Hb_000002_110 Hb_001500_130 Hb_001500_130 Hb_010589_010--Hb_001500_130 Hb_010172_040 Hb_010172_040 Hb_002809_180--Hb_010172_040 Hb_001140_290 Hb_001140_290 Hb_002809_180--Hb_001140_290 Hb_002809_180--Hb_010589_010 Hb_002809_180--Hb_003152_020 Hb_007163_110 Hb_007163_110 Hb_003152_020--Hb_007163_110 Hb_136408_040 Hb_136408_040 Hb_003152_020--Hb_136408_040 Hb_003152_020--Hb_010589_010 Hb_005000_150 Hb_005000_150 Hb_003152_020--Hb_005000_150 Hb_000654_020 Hb_000654_020 Hb_010883_160--Hb_000654_020 Hb_000029_210 Hb_000029_210 Hb_010883_160--Hb_000029_210 Hb_010883_160--Hb_003549_100 Hb_000402_060 Hb_000402_060 Hb_010883_160--Hb_000402_060 Hb_000076_240 Hb_000076_240 Hb_010883_160--Hb_000076_240 Hb_000002_110--Hb_001433_090 Hb_000002_110--Hb_001500_130 Hb_005183_050 Hb_005183_050 Hb_000002_110--Hb_005183_050 Hb_020956_030 Hb_020956_030 Hb_000002_110--Hb_020956_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.026066 0.133414 0.496286 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0112777 0.586877

CAGE analysis