Hb_010883_160

Information

Type -
Description -
Location Contig10883: 132313-133575
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08760g
description hypothetical protein
nr
ID XP_012078178.1
description PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]
swissprot
ID P28493
description Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1
trembl
ID A0A067KLV1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12056 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02672: 132300-132704 , PASA_asmbl_02673: 132309-132709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010883_160 0.0 - - PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]
2 Hb_000654_020 0.0527804354 - - hypothetical protein CICLE_v10006262mg [Citrus clementina]
3 Hb_001397_020 0.0668394775 - - cytochrome P450 family protein [Populus trichocarpa]
4 Hb_000029_210 0.0677004026 - - protein binding protein, putative [Ricinus communis]
5 Hb_003549_100 0.069465016 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
6 Hb_000402_060 0.0712323007 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
7 Hb_000076_240 0.0722815282 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
8 Hb_000809_010 0.0737688569 - - hypothetical protein JCGZ_12342 [Jatropha curcas]
9 Hb_002073_130 0.0824186772 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
10 Hb_132880_010 0.0850427348 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
11 Hb_001408_200 0.0862807647 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
12 Hb_001163_010 0.0878685897 - - PREDICTED: syncoilin [Jatropha curcas]
13 Hb_008518_060 0.0921822378 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
14 Hb_003152_020 0.0947359732 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
15 Hb_002809_180 0.0954000327 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
16 Hb_001053_120 0.0981544412 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
17 Hb_001097_030 0.0991203068 - - nuclear transport factor, putative [Ricinus communis]
18 Hb_005539_150 0.1003366875 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Jatropha curcas]
19 Hb_000122_230 0.1027121587 - - laccase, putative [Ricinus communis]
20 Hb_095744_010 0.1037569421 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_010883_160 Hb_010883_160 Hb_000654_020 Hb_000654_020 Hb_010883_160--Hb_000654_020 Hb_001397_020 Hb_001397_020 Hb_010883_160--Hb_001397_020 Hb_000029_210 Hb_000029_210 Hb_010883_160--Hb_000029_210 Hb_003549_100 Hb_003549_100 Hb_010883_160--Hb_003549_100 Hb_000402_060 Hb_000402_060 Hb_010883_160--Hb_000402_060 Hb_000076_240 Hb_000076_240 Hb_010883_160--Hb_000076_240 Hb_000809_010 Hb_000809_010 Hb_000654_020--Hb_000809_010 Hb_005539_150 Hb_005539_150 Hb_000654_020--Hb_005539_150 Hb_008441_010 Hb_008441_010 Hb_000654_020--Hb_008441_010 Hb_002245_060 Hb_002245_060 Hb_000654_020--Hb_002245_060 Hb_000654_020--Hb_000402_060 Hb_001397_020--Hb_003549_100 Hb_010589_010 Hb_010589_010 Hb_001397_020--Hb_010589_010 Hb_002809_180 Hb_002809_180 Hb_001397_020--Hb_002809_180 Hb_003152_020 Hb_003152_020 Hb_001397_020--Hb_003152_020 Hb_000002_110 Hb_000002_110 Hb_001397_020--Hb_000002_110 Hb_008518_060 Hb_008518_060 Hb_000029_210--Hb_008518_060 Hb_005062_100 Hb_005062_100 Hb_000029_210--Hb_005062_100 Hb_001163_010 Hb_001163_010 Hb_000029_210--Hb_001163_010 Hb_001053_120 Hb_001053_120 Hb_000029_210--Hb_001053_120 Hb_001097_030 Hb_001097_030 Hb_000029_210--Hb_001097_030 Hb_023342_010 Hb_023342_010 Hb_000029_210--Hb_023342_010 Hb_132880_010 Hb_132880_010 Hb_003549_100--Hb_132880_010 Hb_029587_010 Hb_029587_010 Hb_003549_100--Hb_029587_010 Hb_003549_100--Hb_010589_010 Hb_003549_100--Hb_002809_180 Hb_095744_010 Hb_095744_010 Hb_003549_100--Hb_095744_010 Hb_001408_200 Hb_001408_200 Hb_000402_060--Hb_001408_200 Hb_003058_240 Hb_003058_240 Hb_000402_060--Hb_003058_240 Hb_000402_060--Hb_002809_180 Hb_000402_060--Hb_001397_020 Hb_000076_240--Hb_003549_100 Hb_000076_240--Hb_132880_010 Hb_000076_240--Hb_001397_020 Hb_000076_240--Hb_003152_020 Hb_136408_040 Hb_136408_040 Hb_000076_240--Hb_136408_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.077456 1.11377 4.32966 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.205514 5.72579

CAGE analysis