Hb_008518_060

Information

Type -
Description -
Location Contig8518: 68697-74745
Sequence    

Annotation

kegg
ID rcu:RCOM_1346070
description long-chain-fatty-acid CoA ligase, putative (EC:6.2.1.3)
nr
ID XP_012082936.1
description PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
swissprot
ID O22898
description Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1
trembl
ID A0A067JZT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14059 PE=4 SV=1
Gene Ontology
ID GO:0004467
description long chain acyl- synthetase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60435: 68820-74759 , PASA_asmbl_60436: 68780-74069 , PASA_asmbl_60437: 71272-71538 , PASA_asmbl_60438: 72929-73210 , PASA_asmbl_60439: 74170-74713
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008518_060 0.0 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
2 Hb_000029_210 0.0435520538 - - protein binding protein, putative [Ricinus communis]
3 Hb_001053_120 0.0654398028 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
4 Hb_001163_010 0.0680233694 - - PREDICTED: syncoilin [Jatropha curcas]
5 Hb_005062_100 0.0703743895 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
6 Hb_001397_020 0.0711906601 - - cytochrome P450 family protein [Populus trichocarpa]
7 Hb_002170_030 0.0758593325 - - PREDICTED: laccase-4-like [Jatropha curcas]
8 Hb_023342_010 0.0761400203 - - -
9 Hb_009158_040 0.0795106113 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
10 Hb_008705_080 0.0799750042 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
11 Hb_026198_080 0.080380695 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
12 Hb_003549_100 0.0815610771 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
13 Hb_001097_030 0.0828743254 - - nuclear transport factor, putative [Ricinus communis]
14 Hb_022092_070 0.0831204221 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Jatropha curcas]
15 Hb_000023_100 0.086627927 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
16 Hb_000260_520 0.0870149045 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_029587_010 0.0875566695 - - G-type lectin S-receptor-like serine/threonine-protein kinase [Glycine soja]
18 Hb_000427_020 0.0907047563 - - PsbA, partial [Dianthus pygmaeus]
19 Hb_005066_040 0.0917584515 - - Reticuline oxidase precursor, putative [Ricinus communis]
20 Hb_010883_160 0.0921822378 - - PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008518_060 Hb_008518_060 Hb_000029_210 Hb_000029_210 Hb_008518_060--Hb_000029_210 Hb_001053_120 Hb_001053_120 Hb_008518_060--Hb_001053_120 Hb_001163_010 Hb_001163_010 Hb_008518_060--Hb_001163_010 Hb_005062_100 Hb_005062_100 Hb_008518_060--Hb_005062_100 Hb_001397_020 Hb_001397_020 Hb_008518_060--Hb_001397_020 Hb_002170_030 Hb_002170_030 Hb_008518_060--Hb_002170_030 Hb_000029_210--Hb_005062_100 Hb_000029_210--Hb_001163_010 Hb_000029_210--Hb_001053_120 Hb_001097_030 Hb_001097_030 Hb_000029_210--Hb_001097_030 Hb_023342_010 Hb_023342_010 Hb_000029_210--Hb_023342_010 Hb_009158_040 Hb_009158_040 Hb_001053_120--Hb_009158_040 Hb_001053_120--Hb_001163_010 Hb_001053_120--Hb_002170_030 Hb_001053_120--Hb_023342_010 Hb_026198_080 Hb_026198_080 Hb_001053_120--Hb_026198_080 Hb_001163_010--Hb_009158_040 Hb_000427_020 Hb_000427_020 Hb_001163_010--Hb_000427_020 Hb_001163_010--Hb_002170_030 Hb_000023_100 Hb_000023_100 Hb_005062_100--Hb_000023_100 Hb_011362_010 Hb_011362_010 Hb_005062_100--Hb_011362_010 Hb_000260_520 Hb_000260_520 Hb_005062_100--Hb_000260_520 Hb_000739_280 Hb_000739_280 Hb_005062_100--Hb_000739_280 Hb_003549_100 Hb_003549_100 Hb_001397_020--Hb_003549_100 Hb_010589_010 Hb_010589_010 Hb_001397_020--Hb_010589_010 Hb_002809_180 Hb_002809_180 Hb_001397_020--Hb_002809_180 Hb_003152_020 Hb_003152_020 Hb_001397_020--Hb_003152_020 Hb_010883_160 Hb_010883_160 Hb_001397_020--Hb_010883_160 Hb_000002_110 Hb_000002_110 Hb_001397_020--Hb_000002_110 Hb_002170_030--Hb_023342_010 Hb_002170_030--Hb_009158_040 Hb_006351_090 Hb_006351_090 Hb_002170_030--Hb_006351_090 Hb_008705_080 Hb_008705_080 Hb_002170_030--Hb_008705_080 Hb_002170_030--Hb_026198_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.012713 3.83209 11.8369 61.5527 0 0.0058901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0288276 0.0113426 0.0216996 0.764763 88.2447

CAGE analysis