Hb_023342_010

Information

Type -
Description -
Location Contig23342: 12788-14083
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24509: 12777-14266
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023342_010 0.0 - - -
2 Hb_002170_030 0.0380803467 - - PREDICTED: laccase-4-like [Jatropha curcas]
3 Hb_000023_100 0.0381202539 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
4 Hb_009158_040 0.0460850625 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
5 Hb_001053_120 0.049516356 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
6 Hb_026198_080 0.0643376246 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
7 Hb_000029_210 0.0656855657 - - protein binding protein, putative [Ricinus communis]
8 Hb_006351_090 0.0687702106 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
9 Hb_135887_010 0.0718107669 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
10 Hb_001163_010 0.071904079 - - PREDICTED: syncoilin [Jatropha curcas]
11 Hb_000580_200 0.0727466978 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
12 Hb_003786_030 0.0759959909 - - BnaUnng00830D [Brassica napus]
13 Hb_008518_060 0.0761400203 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
14 Hb_008705_080 0.0779773484 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
15 Hb_005062_100 0.0797286583 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
16 Hb_000427_020 0.0813627857 - - PsbA, partial [Dianthus pygmaeus]
17 Hb_001097_170 0.0832148076 - - PREDICTED: protein NDR1 [Jatropha curcas]
18 Hb_011108_010 0.0860858291 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
19 Hb_003906_080 0.0863130577 - - Peroxidase 66 precursor, putative [Ricinus communis]
20 Hb_151290_010 0.0872532219 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_023342_010 Hb_023342_010 Hb_002170_030 Hb_002170_030 Hb_023342_010--Hb_002170_030 Hb_000023_100 Hb_000023_100 Hb_023342_010--Hb_000023_100 Hb_009158_040 Hb_009158_040 Hb_023342_010--Hb_009158_040 Hb_001053_120 Hb_001053_120 Hb_023342_010--Hb_001053_120 Hb_026198_080 Hb_026198_080 Hb_023342_010--Hb_026198_080 Hb_000029_210 Hb_000029_210 Hb_023342_010--Hb_000029_210 Hb_002170_030--Hb_009158_040 Hb_006351_090 Hb_006351_090 Hb_002170_030--Hb_006351_090 Hb_002170_030--Hb_001053_120 Hb_008705_080 Hb_008705_080 Hb_002170_030--Hb_008705_080 Hb_002170_030--Hb_026198_080 Hb_003786_030 Hb_003786_030 Hb_000023_100--Hb_003786_030 Hb_000023_100--Hb_001053_120 Hb_002973_060 Hb_002973_060 Hb_000023_100--Hb_002973_060 Hb_000023_100--Hb_009158_040 Hb_135887_010 Hb_135887_010 Hb_000023_100--Hb_135887_010 Hb_009158_040--Hb_001053_120 Hb_009158_040--Hb_026198_080 Hb_009158_040--Hb_006351_090 Hb_001163_010 Hb_001163_010 Hb_009158_040--Hb_001163_010 Hb_001053_120--Hb_001163_010 Hb_001053_120--Hb_000029_210 Hb_001053_120--Hb_026198_080 Hb_026198_080--Hb_008705_080 Hb_002311_010 Hb_002311_010 Hb_026198_080--Hb_002311_010 Hb_008518_060 Hb_008518_060 Hb_000029_210--Hb_008518_060 Hb_005062_100 Hb_005062_100 Hb_000029_210--Hb_005062_100 Hb_000029_210--Hb_001163_010 Hb_001097_030 Hb_001097_030 Hb_000029_210--Hb_001097_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.471649 3.37908 20.3934 0 0.0183071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 31.322

CAGE analysis