Hb_135887_010

Information

Type -
Description -
Location Contig135887: 27-887
Sequence    

Annotation

kegg
ID pop:POPTR_0004s02760g
description hypothetical protein
nr
ID XP_011015680.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
swissprot
ID O65476
description Putative cysteine-rich receptor-like protein kinase 16 OS=Arabidopsis thaliana GN=CRK16 PE=3 SV=2
trembl
ID U5GE08
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s02760g PE=4 SV=1
Gene Ontology
ID GO:0000166
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09972: 645-1040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135887_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
2 Hb_011108_010 0.0276943287 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
3 Hb_003786_030 0.0300000762 - - BnaUnng00830D [Brassica napus]
4 Hb_000724_040 0.0440688381 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
5 Hb_005228_050 0.0442279441 - - PREDICTED: uncharacterized protein LOC104896168 [Beta vulgaris subsp. vulgaris]
6 Hb_005991_030 0.0497475492 - - copper ion binding protein, putative [Ricinus communis]
7 Hb_000580_200 0.0559328182 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
8 Hb_002973_060 0.0585244195 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000023_100 0.0637844078 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
10 Hb_151290_010 0.0707612457 - - unnamed protein product [Vitis vinifera]
11 Hb_023342_010 0.0718107669 - - -
12 Hb_099263_010 0.0725378649 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
13 Hb_104014_020 0.079481487 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
14 Hb_002170_030 0.0848229944 - - PREDICTED: laccase-4-like [Jatropha curcas]
15 Hb_000115_030 0.0891107821 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
16 Hb_000540_080 0.0894296979 - - PREDICTED: laccase-17 [Jatropha curcas]
17 Hb_003906_080 0.0903362592 - - Peroxidase 66 precursor, putative [Ricinus communis]
18 Hb_003025_170 0.0911694293 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
19 Hb_009158_040 0.0913390457 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
20 Hb_006351_090 0.0916938326 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]

Gene co-expression network

sample Hb_135887_010 Hb_135887_010 Hb_011108_010 Hb_011108_010 Hb_135887_010--Hb_011108_010 Hb_003786_030 Hb_003786_030 Hb_135887_010--Hb_003786_030 Hb_000724_040 Hb_000724_040 Hb_135887_010--Hb_000724_040 Hb_005228_050 Hb_005228_050 Hb_135887_010--Hb_005228_050 Hb_005991_030 Hb_005991_030 Hb_135887_010--Hb_005991_030 Hb_000580_200 Hb_000580_200 Hb_135887_010--Hb_000580_200 Hb_011108_010--Hb_005991_030 Hb_011108_010--Hb_005228_050 Hb_011108_010--Hb_000724_040 Hb_011108_010--Hb_003786_030 Hb_099263_010 Hb_099263_010 Hb_011108_010--Hb_099263_010 Hb_003786_030--Hb_000724_040 Hb_002973_060 Hb_002973_060 Hb_003786_030--Hb_002973_060 Hb_003786_030--Hb_005228_050 Hb_104014_020 Hb_104014_020 Hb_003786_030--Hb_104014_020 Hb_000724_040--Hb_005228_050 Hb_000724_040--Hb_002973_060 Hb_000115_030 Hb_000115_030 Hb_000724_040--Hb_000115_030 Hb_005228_050--Hb_002973_060 Hb_000540_080 Hb_000540_080 Hb_005228_050--Hb_000540_080 Hb_005991_030--Hb_099263_010 Hb_005991_030--Hb_005228_050 Hb_002960_180 Hb_002960_180 Hb_005991_030--Hb_002960_180 Hb_005991_030--Hb_000724_040 Hb_151290_010 Hb_151290_010 Hb_000580_200--Hb_151290_010 Hb_000580_200--Hb_003786_030 Hb_009158_040 Hb_009158_040 Hb_000580_200--Hb_009158_040 Hb_023342_010 Hb_023342_010 Hb_000580_200--Hb_023342_010 Hb_000023_100 Hb_000023_100 Hb_000580_200--Hb_000023_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.263046 1.46493 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.57834

CAGE analysis