Hb_000580_200

Information

Type -
Description -
Location Contig580: 164669-167242
Sequence    

Annotation

kegg
ID rcu:RCOM_1611040
description Pectinesterase-2 precursor, putative (EC:3.1.1.11)
nr
ID XP_012083608.1
description PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
swissprot
ID O04887
description Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1
trembl
ID A0A067K938
description Pectinesterase OS=Jatropha curcas GN=JCGZ_14551 PE=3 SV=1
Gene Ontology
ID GO:0005576
description pectinesterase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_200 0.0 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
2 Hb_135887_010 0.0559328182 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
3 Hb_151290_010 0.0593412756 - - unnamed protein product [Vitis vinifera]
4 Hb_003786_030 0.063552046 - - BnaUnng00830D [Brassica napus]
5 Hb_009158_040 0.0649060396 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
6 Hb_023342_010 0.0727466978 - - -
7 Hb_000023_100 0.0737408243 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
8 Hb_006351_090 0.0744402222 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
9 Hb_001053_120 0.0759625416 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
10 Hb_001097_170 0.0770004008 - - PREDICTED: protein NDR1 [Jatropha curcas]
11 Hb_002170_030 0.080798222 - - PREDICTED: laccase-4-like [Jatropha curcas]
12 Hb_011108_010 0.0835112267 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
13 Hb_104014_020 0.0855737058 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
14 Hb_003025_170 0.0859408758 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
15 Hb_002973_060 0.0886487014 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000724_040 0.0889310753 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
17 Hb_003906_080 0.0912382469 - - Peroxidase 66 precursor, putative [Ricinus communis]
18 Hb_000563_520 0.0915191317 - - multidrug resistance pump, putative [Ricinus communis]
19 Hb_005228_050 0.0925003348 - - PREDICTED: uncharacterized protein LOC104896168 [Beta vulgaris subsp. vulgaris]
20 Hb_026198_080 0.0929666974 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]

Gene co-expression network

sample Hb_000580_200 Hb_000580_200 Hb_135887_010 Hb_135887_010 Hb_000580_200--Hb_135887_010 Hb_151290_010 Hb_151290_010 Hb_000580_200--Hb_151290_010 Hb_003786_030 Hb_003786_030 Hb_000580_200--Hb_003786_030 Hb_009158_040 Hb_009158_040 Hb_000580_200--Hb_009158_040 Hb_023342_010 Hb_023342_010 Hb_000580_200--Hb_023342_010 Hb_000023_100 Hb_000023_100 Hb_000580_200--Hb_000023_100 Hb_011108_010 Hb_011108_010 Hb_135887_010--Hb_011108_010 Hb_135887_010--Hb_003786_030 Hb_000724_040 Hb_000724_040 Hb_135887_010--Hb_000724_040 Hb_005228_050 Hb_005228_050 Hb_135887_010--Hb_005228_050 Hb_005991_030 Hb_005991_030 Hb_135887_010--Hb_005991_030 Hb_151290_010--Hb_003786_030 Hb_104014_020 Hb_104014_020 Hb_151290_010--Hb_104014_020 Hb_003025_170 Hb_003025_170 Hb_151290_010--Hb_003025_170 Hb_151290_010--Hb_135887_010 Hb_151290_010--Hb_000023_100 Hb_003786_030--Hb_000724_040 Hb_002973_060 Hb_002973_060 Hb_003786_030--Hb_002973_060 Hb_003786_030--Hb_005228_050 Hb_003786_030--Hb_011108_010 Hb_003786_030--Hb_104014_020 Hb_001053_120 Hb_001053_120 Hb_009158_040--Hb_001053_120 Hb_002170_030 Hb_002170_030 Hb_009158_040--Hb_002170_030 Hb_026198_080 Hb_026198_080 Hb_009158_040--Hb_026198_080 Hb_009158_040--Hb_023342_010 Hb_006351_090 Hb_006351_090 Hb_009158_040--Hb_006351_090 Hb_001163_010 Hb_001163_010 Hb_009158_040--Hb_001163_010 Hb_023342_010--Hb_002170_030 Hb_023342_010--Hb_000023_100 Hb_023342_010--Hb_001053_120 Hb_023342_010--Hb_026198_080 Hb_000029_210 Hb_000029_210 Hb_023342_010--Hb_000029_210 Hb_000023_100--Hb_003786_030 Hb_000023_100--Hb_001053_120 Hb_000023_100--Hb_002973_060 Hb_000023_100--Hb_009158_040 Hb_000023_100--Hb_135887_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0169377 0.122025 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.16324

CAGE analysis