Hb_001163_010

Information

Type -
Description -
Location Contig1163: 18550-20042
Sequence    

Annotation

kegg
ID rcu:RCOM_0793150
description hypothetical protein
nr
ID XP_012075866.1
description PREDICTED: syncoilin [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KES2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10906 PE=4 SV=1
Gene Ontology
ID GO:0010413
description rab6-interacting golgin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05016: 18650-20017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001163_010 0.0 - - PREDICTED: syncoilin [Jatropha curcas]
2 Hb_001053_120 0.0412449322 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
3 Hb_000029_210 0.0578383246 - - protein binding protein, putative [Ricinus communis]
4 Hb_009158_040 0.0598166596 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
5 Hb_008518_060 0.0680233694 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
6 Hb_000427_020 0.0684772143 - - PsbA, partial [Dianthus pygmaeus]
7 Hb_002170_030 0.0691293319 - - PREDICTED: laccase-4-like [Jatropha curcas]
8 Hb_008705_080 0.0693004616 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
9 Hb_001097_030 0.0718719919 - - nuclear transport factor, putative [Ricinus communis]
10 Hb_023342_010 0.071904079 - - -
11 Hb_000023_100 0.0769934448 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
12 Hb_001097_170 0.0797045104 - - PREDICTED: protein NDR1 [Jatropha curcas]
13 Hb_003549_100 0.0809595754 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
14 Hb_026198_080 0.0857726738 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
15 Hb_006351_090 0.0870125919 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
16 Hb_010883_160 0.0878685897 - - PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]
17 Hb_000563_520 0.0890835327 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_005062_100 0.0919344377 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
19 Hb_001397_020 0.0932637531 - - cytochrome P450 family protein [Populus trichocarpa]
20 Hb_000416_020 0.0944972339 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001163_010 Hb_001163_010 Hb_001053_120 Hb_001053_120 Hb_001163_010--Hb_001053_120 Hb_000029_210 Hb_000029_210 Hb_001163_010--Hb_000029_210 Hb_009158_040 Hb_009158_040 Hb_001163_010--Hb_009158_040 Hb_008518_060 Hb_008518_060 Hb_001163_010--Hb_008518_060 Hb_000427_020 Hb_000427_020 Hb_001163_010--Hb_000427_020 Hb_002170_030 Hb_002170_030 Hb_001163_010--Hb_002170_030 Hb_001053_120--Hb_009158_040 Hb_001053_120--Hb_002170_030 Hb_023342_010 Hb_023342_010 Hb_001053_120--Hb_023342_010 Hb_001053_120--Hb_000029_210 Hb_026198_080 Hb_026198_080 Hb_001053_120--Hb_026198_080 Hb_000029_210--Hb_008518_060 Hb_005062_100 Hb_005062_100 Hb_000029_210--Hb_005062_100 Hb_001097_030 Hb_001097_030 Hb_000029_210--Hb_001097_030 Hb_000029_210--Hb_023342_010 Hb_009158_040--Hb_002170_030 Hb_009158_040--Hb_026198_080 Hb_009158_040--Hb_023342_010 Hb_006351_090 Hb_006351_090 Hb_009158_040--Hb_006351_090 Hb_008518_060--Hb_001053_120 Hb_008518_060--Hb_005062_100 Hb_001397_020 Hb_001397_020 Hb_008518_060--Hb_001397_020 Hb_008518_060--Hb_002170_030 Hb_000427_020--Hb_001053_120 Hb_000427_020--Hb_009158_040 Hb_000427_020--Hb_023342_010 Hb_000427_020--Hb_000029_210 Hb_000023_100 Hb_000023_100 Hb_000427_020--Hb_000023_100 Hb_002170_030--Hb_023342_010 Hb_002170_030--Hb_006351_090 Hb_008705_080 Hb_008705_080 Hb_002170_030--Hb_008705_080 Hb_002170_030--Hb_026198_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.632019 1.84256 14.0962 78.5408 0.25937 0.0366905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.836081 106.569

CAGE analysis