Hb_000427_020

Information

Type -
Description -
Location Contig427: 32137-32376
Sequence    

Annotation

kegg
ID csv:101214601
description photosystem Q(B) protein-like
nr
ID ADG84753.1
description PsbA, partial [Dianthus pygmaeus]
swissprot
ID P50155
description Photosystem II protein D1 OS=Picea abies GN=psbA PE=2 SV=2
trembl
ID D6NHX5
description PsbA (Fragment) OS=Dianthus pygmaeus GN=psbA PE=4 SV=1
Gene Ontology
ID GO:0045156
description photosystem ii 32 kda protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000427_020 0.0 - - PsbA, partial [Dianthus pygmaeus]
2 Hb_001163_010 0.0684772143 - - PREDICTED: syncoilin [Jatropha curcas]
3 Hb_001053_120 0.0729648019 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
4 Hb_009158_040 0.0807858194 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
5 Hb_023342_010 0.0813627857 - - -
6 Hb_000029_210 0.0838013917 - - protein binding protein, putative [Ricinus communis]
7 Hb_000023_100 0.0844150283 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
8 Hb_001097_170 0.0880416869 - - PREDICTED: protein NDR1 [Jatropha curcas]
9 Hb_003549_100 0.089959977 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
10 Hb_002170_030 0.0900491083 - - PREDICTED: laccase-4-like [Jatropha curcas]
11 Hb_008518_060 0.0907047563 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
12 Hb_095744_010 0.0967989852 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]
13 Hb_005062_100 0.1004264335 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
14 Hb_008705_080 0.1022629926 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
15 Hb_151290_010 0.1025415893 - - unnamed protein product [Vitis vinifera]
16 Hb_026198_080 0.102885493 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
17 Hb_001097_030 0.1050459278 - - nuclear transport factor, putative [Ricinus communis]
18 Hb_000580_200 0.1059717115 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
19 Hb_010883_160 0.1073196739 - - PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]
20 Hb_006351_090 0.1080081456 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]

Gene co-expression network

sample Hb_000427_020 Hb_000427_020 Hb_001163_010 Hb_001163_010 Hb_000427_020--Hb_001163_010 Hb_001053_120 Hb_001053_120 Hb_000427_020--Hb_001053_120 Hb_009158_040 Hb_009158_040 Hb_000427_020--Hb_009158_040 Hb_023342_010 Hb_023342_010 Hb_000427_020--Hb_023342_010 Hb_000029_210 Hb_000029_210 Hb_000427_020--Hb_000029_210 Hb_000023_100 Hb_000023_100 Hb_000427_020--Hb_000023_100 Hb_001163_010--Hb_001053_120 Hb_001163_010--Hb_000029_210 Hb_001163_010--Hb_009158_040 Hb_008518_060 Hb_008518_060 Hb_001163_010--Hb_008518_060 Hb_002170_030 Hb_002170_030 Hb_001163_010--Hb_002170_030 Hb_001053_120--Hb_009158_040 Hb_001053_120--Hb_002170_030 Hb_001053_120--Hb_023342_010 Hb_001053_120--Hb_000029_210 Hb_026198_080 Hb_026198_080 Hb_001053_120--Hb_026198_080 Hb_009158_040--Hb_002170_030 Hb_009158_040--Hb_026198_080 Hb_009158_040--Hb_023342_010 Hb_006351_090 Hb_006351_090 Hb_009158_040--Hb_006351_090 Hb_023342_010--Hb_002170_030 Hb_023342_010--Hb_000023_100 Hb_023342_010--Hb_026198_080 Hb_023342_010--Hb_000029_210 Hb_000029_210--Hb_008518_060 Hb_005062_100 Hb_005062_100 Hb_000029_210--Hb_005062_100 Hb_001097_030 Hb_001097_030 Hb_000029_210--Hb_001097_030 Hb_003786_030 Hb_003786_030 Hb_000023_100--Hb_003786_030 Hb_000023_100--Hb_001053_120 Hb_002973_060 Hb_002973_060 Hb_000023_100--Hb_002973_060 Hb_000023_100--Hb_009158_040 Hb_135887_010 Hb_135887_010 Hb_000023_100--Hb_135887_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.51452 21.1254 216.999 1083.99 2.32215 21.349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.70779 0.703538 5.35339 1471.68

CAGE analysis