Hb_000023_100

Information

Type -
Description -
Location Contig23: 227176-233267
Sequence    

Annotation

kegg
ID tcc:TCM_016671
description Mechanosensitive channel of small conductance-like 10
nr
ID XP_007040815.1
description Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
swissprot
ID Q9LYG9
description Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1
trembl
ID A0A061G6X5
description Mechanosensitive channel of small conductance-like 10 OS=Theobroma cacao GN=TCM_016671 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mechanosensitive ion channel protein 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23935: 227422-229062
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_100 0.0 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
2 Hb_023342_010 0.0381202539 - - -
3 Hb_003786_030 0.0538342106 - - BnaUnng00830D [Brassica napus]
4 Hb_001053_120 0.0612069551 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
5 Hb_002973_060 0.0624598421 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009158_040 0.0634752045 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
7 Hb_135887_010 0.0637844078 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
8 Hb_000029_210 0.0656934267 - - protein binding protein, putative [Ricinus communis]
9 Hb_000724_040 0.065722162 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
10 Hb_104014_020 0.0668221675 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
11 Hb_002170_030 0.0679905283 - - PREDICTED: laccase-4-like [Jatropha curcas]
12 Hb_005228_050 0.0694688374 - - PREDICTED: uncharacterized protein LOC104896168 [Beta vulgaris subsp. vulgaris]
13 Hb_005062_100 0.0704263276 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
14 Hb_151290_010 0.0732238269 - - unnamed protein product [Vitis vinifera]
15 Hb_000580_200 0.0737408243 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
16 Hb_003025_170 0.0739597995 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
17 Hb_001097_170 0.0763378519 - - PREDICTED: protein NDR1 [Jatropha curcas]
18 Hb_011108_010 0.0764932259 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
19 Hb_001163_010 0.0769934448 - - PREDICTED: syncoilin [Jatropha curcas]
20 Hb_000077_040 0.0803423277 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000023_100 Hb_000023_100 Hb_023342_010 Hb_023342_010 Hb_000023_100--Hb_023342_010 Hb_003786_030 Hb_003786_030 Hb_000023_100--Hb_003786_030 Hb_001053_120 Hb_001053_120 Hb_000023_100--Hb_001053_120 Hb_002973_060 Hb_002973_060 Hb_000023_100--Hb_002973_060 Hb_009158_040 Hb_009158_040 Hb_000023_100--Hb_009158_040 Hb_135887_010 Hb_135887_010 Hb_000023_100--Hb_135887_010 Hb_002170_030 Hb_002170_030 Hb_023342_010--Hb_002170_030 Hb_023342_010--Hb_009158_040 Hb_023342_010--Hb_001053_120 Hb_026198_080 Hb_026198_080 Hb_023342_010--Hb_026198_080 Hb_000029_210 Hb_000029_210 Hb_023342_010--Hb_000029_210 Hb_000724_040 Hb_000724_040 Hb_003786_030--Hb_000724_040 Hb_003786_030--Hb_002973_060 Hb_003786_030--Hb_135887_010 Hb_005228_050 Hb_005228_050 Hb_003786_030--Hb_005228_050 Hb_011108_010 Hb_011108_010 Hb_003786_030--Hb_011108_010 Hb_104014_020 Hb_104014_020 Hb_003786_030--Hb_104014_020 Hb_001053_120--Hb_009158_040 Hb_001163_010 Hb_001163_010 Hb_001053_120--Hb_001163_010 Hb_001053_120--Hb_002170_030 Hb_001053_120--Hb_000029_210 Hb_001053_120--Hb_026198_080 Hb_002973_060--Hb_000724_040 Hb_000115_030 Hb_000115_030 Hb_002973_060--Hb_000115_030 Hb_002973_060--Hb_005228_050 Hb_002973_060--Hb_104014_020 Hb_000077_040 Hb_000077_040 Hb_002973_060--Hb_000077_040 Hb_009158_040--Hb_002170_030 Hb_009158_040--Hb_026198_080 Hb_006351_090 Hb_006351_090 Hb_009158_040--Hb_006351_090 Hb_009158_040--Hb_001163_010 Hb_135887_010--Hb_011108_010 Hb_135887_010--Hb_000724_040 Hb_135887_010--Hb_005228_050 Hb_005991_030 Hb_005991_030 Hb_135887_010--Hb_005991_030 Hb_000580_200 Hb_000580_200 Hb_135887_010--Hb_000580_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00915748 0.139238 0.61819 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.978924

CAGE analysis