Hb_005991_030

Information

Type -
Description -
Location Contig5991: 43737-45256
Sequence    

Annotation

kegg
ID rcu:RCOM_0771550
description copper ion binding protein, putative
nr
ID XP_002530373.1
description copper ion binding protein, putative [Ricinus communis]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID B9SWK4
description Copper ion binding protein, putative OS=Ricinus communis GN=RCOM_0771550 PE=4 SV=1
Gene Ontology
ID GO:0046872
description heavy metal-associated isoprenylated plant protein 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005991_030 0.0 - - copper ion binding protein, putative [Ricinus communis]
2 Hb_011108_010 0.0312521961 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
3 Hb_099263_010 0.0364784985 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
4 Hb_135887_010 0.0497475492 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
5 Hb_005228_050 0.0632168184 - - PREDICTED: uncharacterized protein LOC104896168 [Beta vulgaris subsp. vulgaris]
6 Hb_002960_180 0.068260355 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
7 Hb_000724_040 0.0685814358 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
8 Hb_003786_030 0.0724306692 - - BnaUnng00830D [Brassica napus]
9 Hb_034299_010 0.0770412987 - - F-box and wd40 domain protein, putative [Ricinus communis]
10 Hb_000007_290 0.087654072 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
11 Hb_094074_010 0.0891298735 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
12 Hb_003906_080 0.0892161619 - - Peroxidase 66 precursor, putative [Ricinus communis]
13 Hb_045260_010 0.0899785846 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
14 Hb_002010_040 0.090457741 - - -
15 Hb_000540_080 0.0913223065 - - PREDICTED: laccase-17 [Jatropha curcas]
16 Hb_002973_060 0.0924891474 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002929_040 0.0934120575 - - zinc finger protein, putative [Ricinus communis]
18 Hb_000580_200 0.0994137827 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
19 Hb_000023_100 0.0995016922 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
20 Hb_023342_010 0.0998114836 - - -

Gene co-expression network

sample Hb_005991_030 Hb_005991_030 Hb_011108_010 Hb_011108_010 Hb_005991_030--Hb_011108_010 Hb_099263_010 Hb_099263_010 Hb_005991_030--Hb_099263_010 Hb_135887_010 Hb_135887_010 Hb_005991_030--Hb_135887_010 Hb_005228_050 Hb_005228_050 Hb_005991_030--Hb_005228_050 Hb_002960_180 Hb_002960_180 Hb_005991_030--Hb_002960_180 Hb_000724_040 Hb_000724_040 Hb_005991_030--Hb_000724_040 Hb_011108_010--Hb_135887_010 Hb_011108_010--Hb_005228_050 Hb_011108_010--Hb_000724_040 Hb_003786_030 Hb_003786_030 Hb_011108_010--Hb_003786_030 Hb_011108_010--Hb_099263_010 Hb_000007_290 Hb_000007_290 Hb_099263_010--Hb_000007_290 Hb_002010_040 Hb_002010_040 Hb_099263_010--Hb_002010_040 Hb_045260_010 Hb_045260_010 Hb_099263_010--Hb_045260_010 Hb_099263_010--Hb_002960_180 Hb_135887_010--Hb_003786_030 Hb_135887_010--Hb_000724_040 Hb_135887_010--Hb_005228_050 Hb_000580_200 Hb_000580_200 Hb_135887_010--Hb_000580_200 Hb_005228_050--Hb_000724_040 Hb_005228_050--Hb_003786_030 Hb_002973_060 Hb_002973_060 Hb_005228_050--Hb_002973_060 Hb_000540_080 Hb_000540_080 Hb_005228_050--Hb_000540_080 Hb_094074_010 Hb_094074_010 Hb_002960_180--Hb_094074_010 Hb_002929_040 Hb_002929_040 Hb_002960_180--Hb_002929_040 Hb_034299_010 Hb_034299_010 Hb_002960_180--Hb_034299_010 Hb_002042_220 Hb_002042_220 Hb_002960_180--Hb_002042_220 Hb_000724_040--Hb_002973_060 Hb_000724_040--Hb_003786_030 Hb_000115_030 Hb_000115_030 Hb_000724_040--Hb_000115_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.498165 3.13229 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 6.86141

CAGE analysis