Hb_094074_010

Information

Type -
Description -
Location Contig94074: 4169-6076
Sequence    

Annotation

kegg
ID mdm:103446651
description G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1
nr
ID XP_011015680.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID F6HD39
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0484g00030 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_094074_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
2 Hb_002960_180 0.0439297361 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
3 Hb_004197_030 0.0549660112 - - hypothetical protein JCGZ_16263 [Jatropha curcas]
4 Hb_002042_220 0.0609115364 - - Kinesin heavy chain, putative [Ricinus communis]
5 Hb_002929_040 0.0613601568 - - zinc finger protein, putative [Ricinus communis]
6 Hb_034299_010 0.077474978 - - F-box and wd40 domain protein, putative [Ricinus communis]
7 Hb_099263_010 0.0788341178 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
8 Hb_000015_220 0.081192668 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
9 Hb_000007_290 0.0816009859 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
10 Hb_000043_060 0.0843074233 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
11 Hb_004329_030 0.0846668509 - - hypothetical protein JCGZ_17335 [Jatropha curcas]
12 Hb_002010_040 0.0859051965 - - -
13 Hb_005991_030 0.0891298735 - - copper ion binding protein, putative [Ricinus communis]
14 Hb_000940_120 0.0899794557 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
15 Hb_001051_020 0.0947025329 - - hypothetical protein L484_008044 [Morus notabilis]
16 Hb_005474_070 0.0960602595 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
17 Hb_003647_070 0.0971613987 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
18 Hb_012049_010 0.1004683538 - - hypothetical protein B456_002G055100 [Gossypium raimondii]
19 Hb_002445_020 0.1070867659 - - -
20 Hb_003058_150 0.1083958331 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_094074_010 Hb_094074_010 Hb_002960_180 Hb_002960_180 Hb_094074_010--Hb_002960_180 Hb_004197_030 Hb_004197_030 Hb_094074_010--Hb_004197_030 Hb_002042_220 Hb_002042_220 Hb_094074_010--Hb_002042_220 Hb_002929_040 Hb_002929_040 Hb_094074_010--Hb_002929_040 Hb_034299_010 Hb_034299_010 Hb_094074_010--Hb_034299_010 Hb_099263_010 Hb_099263_010 Hb_094074_010--Hb_099263_010 Hb_002960_180--Hb_002929_040 Hb_002960_180--Hb_099263_010 Hb_002960_180--Hb_034299_010 Hb_002960_180--Hb_002042_220 Hb_005991_030 Hb_005991_030 Hb_002960_180--Hb_005991_030 Hb_000940_120 Hb_000940_120 Hb_004197_030--Hb_000940_120 Hb_004197_030--Hb_002042_220 Hb_003058_150 Hb_003058_150 Hb_004197_030--Hb_003058_150 Hb_005474_070 Hb_005474_070 Hb_004197_030--Hb_005474_070 Hb_000007_290 Hb_000007_290 Hb_004197_030--Hb_000007_290 Hb_002042_220--Hb_000007_290 Hb_002042_220--Hb_005474_070 Hb_002010_040 Hb_002010_040 Hb_002042_220--Hb_002010_040 Hb_003647_070 Hb_003647_070 Hb_002042_220--Hb_003647_070 Hb_002042_220--Hb_000940_120 Hb_004329_030 Hb_004329_030 Hb_002929_040--Hb_004329_030 Hb_002929_040--Hb_005991_030 Hb_002929_040--Hb_034299_010 Hb_002929_040--Hb_099263_010 Hb_001051_020 Hb_001051_020 Hb_034299_010--Hb_001051_020 Hb_034299_010--Hb_004329_030 Hb_034299_010--Hb_099263_010 Hb_034299_010--Hb_000007_290 Hb_034299_010--Hb_002010_040 Hb_099263_010--Hb_005991_030 Hb_011108_010 Hb_011108_010 Hb_099263_010--Hb_011108_010 Hb_099263_010--Hb_000007_290 Hb_099263_010--Hb_002010_040 Hb_045260_010 Hb_045260_010 Hb_099263_010--Hb_045260_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0663121 0.511367 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.71868

CAGE analysis