Hb_045260_010

Information

Type -
Description -
Location Contig45260: 14-828
Sequence    

Annotation

kegg
ID tcc:TCM_027295
description Receptor like protein 21
nr
ID XP_012073900.1
description PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09439 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_045260_010 0.0 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
2 Hb_000363_070 0.0381362986 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003647_070 0.0386584261 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
4 Hb_002010_040 0.0387500798 - - -
5 Hb_000007_290 0.0415918965 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
6 Hb_000540_080 0.0474884837 - - PREDICTED: laccase-17 [Jatropha curcas]
7 Hb_099263_010 0.0573507678 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
8 Hb_005474_070 0.0580468695 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
9 Hb_000140_040 0.0652067622 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
10 Hb_007534_080 0.0664238148 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
11 Hb_005228_050 0.0686339937 - - PREDICTED: uncharacterized protein LOC104896168 [Beta vulgaris subsp. vulgaris]
12 Hb_000724_040 0.0742223616 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
13 Hb_000160_120 0.0743943315 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002042_220 0.074962077 - - Kinesin heavy chain, putative [Ricinus communis]
15 Hb_011362_010 0.0797763207 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
16 Hb_096907_010 0.0798025989 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
17 Hb_011108_010 0.0810043479 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
18 Hb_003528_100 0.0820876513 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
19 Hb_001097_110 0.0821882027 - - gibberellin 20-oxidase, putative [Ricinus communis]
20 Hb_003058_150 0.0827706773 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_045260_010 Hb_045260_010 Hb_000363_070 Hb_000363_070 Hb_045260_010--Hb_000363_070 Hb_003647_070 Hb_003647_070 Hb_045260_010--Hb_003647_070 Hb_002010_040 Hb_002010_040 Hb_045260_010--Hb_002010_040 Hb_000007_290 Hb_000007_290 Hb_045260_010--Hb_000007_290 Hb_000540_080 Hb_000540_080 Hb_045260_010--Hb_000540_080 Hb_099263_010 Hb_099263_010 Hb_045260_010--Hb_099263_010 Hb_000363_070--Hb_000540_080 Hb_000363_070--Hb_003647_070 Hb_000363_070--Hb_002010_040 Hb_000140_040 Hb_000140_040 Hb_000363_070--Hb_000140_040 Hb_000363_070--Hb_000007_290 Hb_003647_070--Hb_002010_040 Hb_003647_070--Hb_000007_290 Hb_005474_070 Hb_005474_070 Hb_003647_070--Hb_005474_070 Hb_002042_220 Hb_002042_220 Hb_003647_070--Hb_002042_220 Hb_007534_080 Hb_007534_080 Hb_003647_070--Hb_007534_080 Hb_002010_040--Hb_000007_290 Hb_002010_040--Hb_005474_070 Hb_002010_040--Hb_002042_220 Hb_002010_040--Hb_099263_010 Hb_000007_290--Hb_005474_070 Hb_000007_290--Hb_002042_220 Hb_000007_290--Hb_099263_010 Hb_005228_050 Hb_005228_050 Hb_000540_080--Hb_005228_050 Hb_000724_040 Hb_000724_040 Hb_000540_080--Hb_000724_040 Hb_011362_010 Hb_011362_010 Hb_000540_080--Hb_011362_010 Hb_000160_120 Hb_000160_120 Hb_000540_080--Hb_000160_120 Hb_005991_030 Hb_005991_030 Hb_099263_010--Hb_005991_030 Hb_011108_010 Hb_011108_010 Hb_099263_010--Hb_011108_010 Hb_002960_180 Hb_002960_180 Hb_099263_010--Hb_002960_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0844967 0.216071 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.627142

CAGE analysis