Hb_000363_070

Information

Type -
Description -
Location Contig363: 60613-61448
Sequence    

Annotation

kegg
ID rcu:RCOM_0047320
description hypothetical protein
nr
ID XP_002529052.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SST3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0047320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37270: 60580-61668
cDNA
(Sanger)
(ID:Location)		 042_K17.ab1: 60580-61668 , 045_B01.ab1: 60580-61668

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_045260_010 0.0381362986 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
3 Hb_000540_080 0.0481010904 - - PREDICTED: laccase-17 [Jatropha curcas]
4 Hb_003647_070 0.0573191254 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
5 Hb_002010_040 0.0599185385 - - -
6 Hb_000140_040 0.062483573 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
7 Hb_000007_290 0.0626769428 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
8 Hb_007534_080 0.0670993652 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
9 Hb_005474_070 0.0722851173 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
10 Hb_000268_050 0.0741420467 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
11 Hb_000160_120 0.0743682705 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011362_010 0.0757317425 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
13 Hb_006718_030 0.0758624707 - - ATPase, F1 complex, gamma subunit protein [Theobroma cacao]
14 Hb_001097_110 0.0765274774 - - gibberellin 20-oxidase, putative [Ricinus communis]
15 Hb_099263_010 0.0780783454 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
16 Hb_003528_100 0.0787560283 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
17 Hb_096907_010 0.080090292 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
18 Hb_046825_010 0.0807321345 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
19 Hb_180094_010 0.0807370989 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
20 Hb_005228_050 0.0813981404 - - PREDICTED: uncharacterized protein LOC104896168 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_000363_070 Hb_000363_070 Hb_045260_010 Hb_045260_010 Hb_000363_070--Hb_045260_010 Hb_000540_080 Hb_000540_080 Hb_000363_070--Hb_000540_080 Hb_003647_070 Hb_003647_070 Hb_000363_070--Hb_003647_070 Hb_002010_040 Hb_002010_040 Hb_000363_070--Hb_002010_040 Hb_000140_040 Hb_000140_040 Hb_000363_070--Hb_000140_040 Hb_000007_290 Hb_000007_290 Hb_000363_070--Hb_000007_290 Hb_045260_010--Hb_003647_070 Hb_045260_010--Hb_002010_040 Hb_045260_010--Hb_000007_290 Hb_045260_010--Hb_000540_080 Hb_099263_010 Hb_099263_010 Hb_045260_010--Hb_099263_010 Hb_005228_050 Hb_005228_050 Hb_000540_080--Hb_005228_050 Hb_000724_040 Hb_000724_040 Hb_000540_080--Hb_000724_040 Hb_011362_010 Hb_011362_010 Hb_000540_080--Hb_011362_010 Hb_000160_120 Hb_000160_120 Hb_000540_080--Hb_000160_120 Hb_003647_070--Hb_002010_040 Hb_003647_070--Hb_000007_290 Hb_005474_070 Hb_005474_070 Hb_003647_070--Hb_005474_070 Hb_002042_220 Hb_002042_220 Hb_003647_070--Hb_002042_220 Hb_007534_080 Hb_007534_080 Hb_003647_070--Hb_007534_080 Hb_002010_040--Hb_000007_290 Hb_002010_040--Hb_005474_070 Hb_002010_040--Hb_002042_220 Hb_002010_040--Hb_099263_010 Hb_180094_010 Hb_180094_010 Hb_000140_040--Hb_180094_010 Hb_127349_020 Hb_127349_020 Hb_000140_040--Hb_127349_020 Hb_001097_110 Hb_001097_110 Hb_000140_040--Hb_001097_110 Hb_000152_300 Hb_000152_300 Hb_000140_040--Hb_000152_300 Hb_046825_010 Hb_046825_010 Hb_000140_040--Hb_046825_010 Hb_000140_040--Hb_007534_080 Hb_000007_290--Hb_005474_070 Hb_000007_290--Hb_002042_220 Hb_000007_290--Hb_099263_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.116622 25.4032 58.4774 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.31731 0.124621 0 0.10473 171.018

CAGE analysis