Hb_000152_300

Information

Type -
Description -
Location Contig152: 253488-255098
Sequence    

Annotation

kegg
ID rcu:RCOM_0902630
description Aspartic proteinase Asp1 precursor, putative
nr
ID XP_002518395.1
description Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
swissprot
ID Q766C3
description Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1
trembl
ID B9RXC6
description Aspartic proteinase Asp1, putative OS=Ricinus communis GN=RCOM_0902630 PE=4 SV=1
Gene Ontology
ID GO:0016787
description aspartic proteinase nepenthesin-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_300 0.0 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
2 Hb_000433_040 0.0103707115 - - -
3 Hb_081344_010 0.0114318617 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
4 Hb_010666_020 0.0117362841 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
5 Hb_127349_020 0.0273056451 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
6 Hb_180094_010 0.0290204791 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
7 Hb_029584_020 0.0391233989 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000140_040 0.0455102725 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
9 Hb_158597_010 0.046300044 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
10 Hb_046825_010 0.052305038 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
11 Hb_000940_060 0.0525876603 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
12 Hb_003805_110 0.0529749272 - - PREDICTED: laccase-11-like [Jatropha curcas]
13 Hb_154064_010 0.0586955369 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
14 Hb_000530_060 0.060242715 - - -
15 Hb_003093_050 0.0620041584 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
16 Hb_004818_010 0.0634940642 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
17 Hb_004143_080 0.064839646 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
18 Hb_001097_110 0.0693795206 - - gibberellin 20-oxidase, putative [Ricinus communis]
19 Hb_000704_020 0.070921528 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000815_120 0.0714972571 - - calcium ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000152_300 Hb_000152_300 Hb_000433_040 Hb_000433_040 Hb_000152_300--Hb_000433_040 Hb_081344_010 Hb_081344_010 Hb_000152_300--Hb_081344_010 Hb_010666_020 Hb_010666_020 Hb_000152_300--Hb_010666_020 Hb_127349_020 Hb_127349_020 Hb_000152_300--Hb_127349_020 Hb_180094_010 Hb_180094_010 Hb_000152_300--Hb_180094_010 Hb_029584_020 Hb_029584_020 Hb_000152_300--Hb_029584_020 Hb_000433_040--Hb_081344_010 Hb_000433_040--Hb_010666_020 Hb_000433_040--Hb_029584_020 Hb_000433_040--Hb_127349_020 Hb_000433_040--Hb_180094_010 Hb_081344_010--Hb_010666_020 Hb_081344_010--Hb_029584_020 Hb_081344_010--Hb_127349_020 Hb_158597_010 Hb_158597_010 Hb_081344_010--Hb_158597_010 Hb_010666_020--Hb_127349_020 Hb_010666_020--Hb_180094_010 Hb_010666_020--Hb_158597_010 Hb_127349_020--Hb_180094_010 Hb_046825_010 Hb_046825_010 Hb_127349_020--Hb_046825_010 Hb_154064_010 Hb_154064_010 Hb_127349_020--Hb_154064_010 Hb_180094_010--Hb_046825_010 Hb_000140_040 Hb_000140_040 Hb_180094_010--Hb_000140_040 Hb_000530_060 Hb_000530_060 Hb_029584_020--Hb_000530_060 Hb_003805_110 Hb_003805_110 Hb_029584_020--Hb_003805_110 Hb_029584_020--Hb_010666_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0107991 0.0116192 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0542886

CAGE analysis