Hb_081344_010

Information

Type -
Description -
Location Contig81344: 228-3862
Sequence    

Annotation

kegg
ID tcc:TCM_045983
description Gag protease polyprotein-like protein
nr
ID XP_012077902.1
description PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID S1S3V9
description Gag protease polyprotein-like protein OS=Theobroma cacao GN=TCM_045983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_081344_010 0.0 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
2 Hb_000433_040 0.0034302334 - - -
3 Hb_000152_300 0.0114318617 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
4 Hb_010666_020 0.0142613727 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
5 Hb_029584_020 0.0317911584 - - conserved hypothetical protein [Ricinus communis]
6 Hb_127349_020 0.0383955825 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
7 Hb_158597_010 0.0399531305 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
8 Hb_180094_010 0.0404352271 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
9 Hb_000940_060 0.0483012603 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
10 Hb_003805_110 0.0504075564 - - PREDICTED: laccase-11-like [Jatropha curcas]
11 Hb_000530_060 0.0513648323 - - -
12 Hb_000140_040 0.0531081308 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
13 Hb_003093_050 0.0552834218 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
14 Hb_004818_010 0.0570256599 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
15 Hb_046825_010 0.0635205696 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
16 Hb_004143_080 0.0647372925 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
17 Hb_000704_020 0.0668154385 - - conserved hypothetical protein [Ricinus communis]
18 Hb_154064_010 0.0682359622 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
19 Hb_000815_120 0.0707579569 - - calcium ion binding protein, putative [Ricinus communis]
20 Hb_001097_110 0.0707713298 - - gibberellin 20-oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_081344_010 Hb_081344_010 Hb_000433_040 Hb_000433_040 Hb_081344_010--Hb_000433_040 Hb_000152_300 Hb_000152_300 Hb_081344_010--Hb_000152_300 Hb_010666_020 Hb_010666_020 Hb_081344_010--Hb_010666_020 Hb_029584_020 Hb_029584_020 Hb_081344_010--Hb_029584_020 Hb_127349_020 Hb_127349_020 Hb_081344_010--Hb_127349_020 Hb_158597_010 Hb_158597_010 Hb_081344_010--Hb_158597_010 Hb_000433_040--Hb_000152_300 Hb_000433_040--Hb_010666_020 Hb_000433_040--Hb_029584_020 Hb_000433_040--Hb_127349_020 Hb_180094_010 Hb_180094_010 Hb_000433_040--Hb_180094_010 Hb_000152_300--Hb_010666_020 Hb_000152_300--Hb_127349_020 Hb_000152_300--Hb_180094_010 Hb_000152_300--Hb_029584_020 Hb_010666_020--Hb_127349_020 Hb_010666_020--Hb_180094_010 Hb_010666_020--Hb_158597_010 Hb_000530_060 Hb_000530_060 Hb_029584_020--Hb_000530_060 Hb_003805_110 Hb_003805_110 Hb_029584_020--Hb_003805_110 Hb_029584_020--Hb_010666_020 Hb_127349_020--Hb_180094_010 Hb_046825_010 Hb_046825_010 Hb_127349_020--Hb_046825_010 Hb_154064_010 Hb_154064_010 Hb_127349_020--Hb_154064_010 Hb_000940_060 Hb_000940_060 Hb_158597_010--Hb_000940_060 Hb_158597_010--Hb_000433_040 Hb_158597_010--Hb_000152_300 Hb_004818_010 Hb_004818_010 Hb_158597_010--Hb_004818_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00557375 0.00566442 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0285807

CAGE analysis