Hb_000940_060

Information

Type -
Description -
Location Contig940: 52203-54270
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13250g
description PROLINE-RICH protein 4
nr
ID XP_006379276.1
description hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
swissprot
ID Q9SKP9
description Proline-rich protein 2 OS=Arabidopsis thaliana GN=PRP2 PE=2 SV=1
trembl
ID U5G0U5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13250g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63139: 52118-53225 , PASA_asmbl_63140: 53404-53540 , PASA_asmbl_63141: 53668-53798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000940_060 0.0 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
2 Hb_158597_010 0.0372710034 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
3 Hb_000243_190 0.041257286 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
4 Hb_010666_020 0.041539595 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
5 Hb_000433_040 0.0458843326 - - -
6 Hb_081344_010 0.0483012603 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
7 Hb_005483_050 0.0505847998 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000152_300 0.0525876603 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
9 Hb_180007_010 0.058486865 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
10 Hb_132840_050 0.0637422728 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
11 Hb_127349_020 0.0639366021 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
12 Hb_013405_240 0.0651750097 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
13 Hb_000029_150 0.0653447266 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007416_250 0.0691433137 - - -
15 Hb_180094_010 0.0715680553 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
16 Hb_031862_220 0.0720034646 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
17 Hb_000373_210 0.0729272448 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
18 Hb_029584_020 0.0729865943 - - conserved hypothetical protein [Ricinus communis]
19 Hb_154064_010 0.0732476371 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
20 Hb_153106_010 0.0741509652 - - hypothetical protein JCGZ_01308 [Jatropha curcas]

Gene co-expression network

sample Hb_000940_060 Hb_000940_060 Hb_158597_010 Hb_158597_010 Hb_000940_060--Hb_158597_010 Hb_000243_190 Hb_000243_190 Hb_000940_060--Hb_000243_190 Hb_010666_020 Hb_010666_020 Hb_000940_060--Hb_010666_020 Hb_000433_040 Hb_000433_040 Hb_000940_060--Hb_000433_040 Hb_081344_010 Hb_081344_010 Hb_000940_060--Hb_081344_010 Hb_005483_050 Hb_005483_050 Hb_000940_060--Hb_005483_050 Hb_158597_010--Hb_000433_040 Hb_158597_010--Hb_081344_010 Hb_158597_010--Hb_010666_020 Hb_000152_300 Hb_000152_300 Hb_158597_010--Hb_000152_300 Hb_004818_010 Hb_004818_010 Hb_158597_010--Hb_004818_010 Hb_013405_240 Hb_013405_240 Hb_000243_190--Hb_013405_240 Hb_007416_250 Hb_007416_250 Hb_000243_190--Hb_007416_250 Hb_132840_050 Hb_132840_050 Hb_000243_190--Hb_132840_050 Hb_016334_010 Hb_016334_010 Hb_000243_190--Hb_016334_010 Hb_000029_150 Hb_000029_150 Hb_000243_190--Hb_000029_150 Hb_010666_020--Hb_000433_040 Hb_010666_020--Hb_000152_300 Hb_010666_020--Hb_081344_010 Hb_127349_020 Hb_127349_020 Hb_010666_020--Hb_127349_020 Hb_180094_010 Hb_180094_010 Hb_010666_020--Hb_180094_010 Hb_000433_040--Hb_081344_010 Hb_000433_040--Hb_000152_300 Hb_029584_020 Hb_029584_020 Hb_000433_040--Hb_029584_020 Hb_000433_040--Hb_127349_020 Hb_000433_040--Hb_180094_010 Hb_081344_010--Hb_000152_300 Hb_081344_010--Hb_029584_020 Hb_081344_010--Hb_127349_020 Hb_005483_050--Hb_000243_190 Hb_005483_050--Hb_132840_050 Hb_180007_010 Hb_180007_010 Hb_005483_050--Hb_180007_010 Hb_005483_050--Hb_000029_150 Hb_000251_160 Hb_000251_160 Hb_005483_050--Hb_000251_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 18.7391 12.9046 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0161528 73.6388

CAGE analysis