Hb_000243_190

Information

Type transcription factor
Description TF Family: MIKC
Location Contig243: 167624-169410
Sequence    

Annotation

kegg
ID vvi:100233014
description TM6; flowering-related B-class MADS-box protein
nr
ID NP_001267937.1
description flowering-related B-class MADS-box protein [Vitis vinifera]
swissprot
ID P23706
description Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1
trembl
ID Q003J2
description Flowering-related B-class MADS-box protein OS=Vitis vinifera GN=TM6 PE=2 SV=1
Gene Ontology
ID GO:0005634
description mads-domain transcription partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_190 0.0 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
2 Hb_013405_240 0.0347916922 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
3 Hb_007416_250 0.0383163798 - - -
4 Hb_132840_050 0.0386837187 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
5 Hb_000940_060 0.041257286 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
6 Hb_016334_010 0.0444765729 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
7 Hb_000029_150 0.0453851494 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005483_050 0.0499439026 - - conserved hypothetical protein [Ricinus communis]
9 Hb_180007_010 0.0536100255 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
10 Hb_013818_020 0.056596566 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
11 Hb_158597_010 0.0570873084 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
12 Hb_153106_010 0.0612762545 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
13 Hb_000282_110 0.0642185541 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
14 Hb_000762_050 0.06558784 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
15 Hb_000251_160 0.0688127077 - - chlorophyll A/B binding protein, putative [Ricinus communis]
16 Hb_004116_030 0.0718830851 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
17 Hb_010812_030 0.0738434866 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010666_020 0.0755493744 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
19 Hb_000433_040 0.0756762363 - - -
20 Hb_101097_010 0.076511414 - - polyprotein [Citrus endogenous pararetrovirus]

Gene co-expression network

sample Hb_000243_190 Hb_000243_190 Hb_013405_240 Hb_013405_240 Hb_000243_190--Hb_013405_240 Hb_007416_250 Hb_007416_250 Hb_000243_190--Hb_007416_250 Hb_132840_050 Hb_132840_050 Hb_000243_190--Hb_132840_050 Hb_000940_060 Hb_000940_060 Hb_000243_190--Hb_000940_060 Hb_016334_010 Hb_016334_010 Hb_000243_190--Hb_016334_010 Hb_000029_150 Hb_000029_150 Hb_000243_190--Hb_000029_150 Hb_013405_240--Hb_007416_250 Hb_013818_020 Hb_013818_020 Hb_013405_240--Hb_013818_020 Hb_000282_110 Hb_000282_110 Hb_013405_240--Hb_000282_110 Hb_013405_240--Hb_000029_150 Hb_013405_240--Hb_016334_010 Hb_007416_250--Hb_013818_020 Hb_007416_250--Hb_000282_110 Hb_007416_250--Hb_000029_150 Hb_000762_050 Hb_000762_050 Hb_007416_250--Hb_000762_050 Hb_153106_010 Hb_153106_010 Hb_132840_050--Hb_153106_010 Hb_180007_010 Hb_180007_010 Hb_132840_050--Hb_180007_010 Hb_132840_050--Hb_016334_010 Hb_000251_160 Hb_000251_160 Hb_132840_050--Hb_000251_160 Hb_000825_010 Hb_000825_010 Hb_132840_050--Hb_000825_010 Hb_158597_010 Hb_158597_010 Hb_000940_060--Hb_158597_010 Hb_010666_020 Hb_010666_020 Hb_000940_060--Hb_010666_020 Hb_000433_040 Hb_000433_040 Hb_000940_060--Hb_000433_040 Hb_081344_010 Hb_081344_010 Hb_000940_060--Hb_081344_010 Hb_005483_050 Hb_005483_050 Hb_000940_060--Hb_005483_050 Hb_016334_010--Hb_000762_050 Hb_000003_530 Hb_000003_530 Hb_016334_010--Hb_000003_530 Hb_004116_030 Hb_004116_030 Hb_016334_010--Hb_004116_030 Hb_008725_280 Hb_008725_280 Hb_016334_010--Hb_008725_280 Hb_005736_030 Hb_005736_030 Hb_000029_150--Hb_005736_030 Hb_000029_150--Hb_132840_050 Hb_000029_150--Hb_013818_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.429115 0.217086 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.68404

CAGE analysis