Hb_008725_280

Information

Type transcription factor
Description TF Family: MYB
Location Contig8725: 148404-150777
Sequence    

Annotation

kegg
ID pop:POPTR_0002s19920g
description POPTRDRAFT_408744; hypothetical protein
nr
ID XP_002302752.2
description hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
swissprot
ID P27898
description Myb-related protein P OS=Zea mays GN=P PE=2 SV=1
trembl
ID B9GSG5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s19920g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_280 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
2 Hb_002161_010 0.0170026733 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
3 Hb_000003_530 0.026260106 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
4 Hb_000245_090 0.0283771814 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
5 Hb_004611_010 0.0309097249 - - Blue copper protein precursor, putative [Ricinus communis]
6 Hb_001038_020 0.0386890715 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
7 Hb_004116_030 0.0434637652 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
8 Hb_000762_050 0.0444522892 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
9 Hb_016334_010 0.0475668581 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
10 Hb_027403_010 0.0527195771 - - P66 protein [Hevea brasiliensis]
11 Hb_007559_020 0.0537750839 - - peptidylprolyl isomerase, putative [Ricinus communis]
12 Hb_097940_010 0.0617192456 - - pollen protein Ole E I-like protein [Medicago truncatula]
13 Hb_003436_040 0.0637071053 - - monovalent cation:proton antiporter, putative [Ricinus communis]
14 Hb_009663_030 0.0652606524 - - Blue copper protein precursor, putative [Ricinus communis]
15 Hb_001104_080 0.0655471055 - - peroxiredoxin, putative [Ricinus communis]
16 Hb_000139_010 0.06644243 - - -
17 Hb_032631_060 0.06712543 - - Myosin heavy chain, putative [Ricinus communis]
18 Hb_013818_020 0.0671336926 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
19 Hb_003653_030 0.0676475624 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000825_010 0.0717930349 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_008725_280 Hb_008725_280 Hb_002161_010 Hb_002161_010 Hb_008725_280--Hb_002161_010 Hb_000003_530 Hb_000003_530 Hb_008725_280--Hb_000003_530 Hb_000245_090 Hb_000245_090 Hb_008725_280--Hb_000245_090 Hb_004611_010 Hb_004611_010 Hb_008725_280--Hb_004611_010 Hb_001038_020 Hb_001038_020 Hb_008725_280--Hb_001038_020 Hb_004116_030 Hb_004116_030 Hb_008725_280--Hb_004116_030 Hb_002161_010--Hb_000003_530 Hb_002161_010--Hb_000245_090 Hb_000762_050 Hb_000762_050 Hb_002161_010--Hb_000762_050 Hb_002161_010--Hb_004611_010 Hb_002161_010--Hb_001038_020 Hb_000003_530--Hb_000762_050 Hb_000003_530--Hb_004116_030 Hb_016334_010 Hb_016334_010 Hb_000003_530--Hb_016334_010 Hb_000003_530--Hb_000245_090 Hb_000245_090--Hb_004611_010 Hb_000245_090--Hb_001038_020 Hb_000245_090--Hb_004116_030 Hb_027403_010 Hb_027403_010 Hb_004611_010--Hb_027403_010 Hb_003436_040 Hb_003436_040 Hb_004611_010--Hb_003436_040 Hb_004611_010--Hb_001038_020 Hb_001038_020--Hb_000003_530 Hb_001038_020--Hb_000762_050 Hb_004116_030--Hb_000762_050 Hb_004116_030--Hb_016334_010 Hb_004116_030--Hb_002161_010 Hb_003653_030 Hb_003653_030 Hb_004116_030--Hb_003653_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 11.2358 2.20999 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 40.377

CAGE analysis