Hb_004611_010

Information

Type -
Description -
Location Contig4611: 25309-25963
Sequence    

Annotation

kegg
ID rcu:RCOM_1075010
description Blue copper protein precursor, putative
nr
ID XP_002527190.1
description Blue copper protein precursor, putative [Ricinus communis]
swissprot
ID Q41001
description Blue copper protein OS=Pisum sativum PE=2 SV=1
trembl
ID B9SMH1
description Blue copper protein, putative OS=Ricinus communis GN=RCOM_1075010 PE=4 SV=1
Gene Ontology
ID GO:0009055
description blue copper protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004611_010 0.0 - - Blue copper protein precursor, putative [Ricinus communis]
2 Hb_008725_280 0.0309097249 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
3 Hb_027403_010 0.03529574 - - P66 protein [Hevea brasiliensis]
4 Hb_000245_090 0.0382026982 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
5 Hb_002161_010 0.0405803443 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
6 Hb_003436_040 0.0425786275 - - monovalent cation:proton antiporter, putative [Ricinus communis]
7 Hb_001038_020 0.0493183198 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
8 Hb_007559_020 0.0534365763 - - peptidylprolyl isomerase, putative [Ricinus communis]
9 Hb_000003_530 0.0555276638 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
10 Hb_097940_010 0.0566336141 - - pollen protein Ole E I-like protein [Medicago truncatula]
11 Hb_000139_010 0.0570407793 - - -
12 Hb_009663_030 0.060150879 - - Blue copper protein precursor, putative [Ricinus communis]
13 Hb_001038_040 0.0625745093 - - -
14 Hb_000692_200 0.0666840364 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
15 Hb_004116_030 0.0684435059 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
16 Hb_001279_380 0.0684750932 - - PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]
17 Hb_008566_060 0.070892438 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000762_050 0.0729768682 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
19 Hb_016334_010 0.0755504446 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
20 Hb_003337_080 0.0756572343 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]

Gene co-expression network

sample Hb_004611_010 Hb_004611_010 Hb_008725_280 Hb_008725_280 Hb_004611_010--Hb_008725_280 Hb_027403_010 Hb_027403_010 Hb_004611_010--Hb_027403_010 Hb_000245_090 Hb_000245_090 Hb_004611_010--Hb_000245_090 Hb_002161_010 Hb_002161_010 Hb_004611_010--Hb_002161_010 Hb_003436_040 Hb_003436_040 Hb_004611_010--Hb_003436_040 Hb_001038_020 Hb_001038_020 Hb_004611_010--Hb_001038_020 Hb_008725_280--Hb_002161_010 Hb_000003_530 Hb_000003_530 Hb_008725_280--Hb_000003_530 Hb_008725_280--Hb_000245_090 Hb_008725_280--Hb_001038_020 Hb_004116_030 Hb_004116_030 Hb_008725_280--Hb_004116_030 Hb_000139_010 Hb_000139_010 Hb_027403_010--Hb_000139_010 Hb_097940_010 Hb_097940_010 Hb_027403_010--Hb_097940_010 Hb_007559_020 Hb_007559_020 Hb_027403_010--Hb_007559_020 Hb_001279_380 Hb_001279_380 Hb_027403_010--Hb_001279_380 Hb_008566_060 Hb_008566_060 Hb_027403_010--Hb_008566_060 Hb_000245_090--Hb_002161_010 Hb_000245_090--Hb_000003_530 Hb_000245_090--Hb_001038_020 Hb_000245_090--Hb_004116_030 Hb_002161_010--Hb_000003_530 Hb_000762_050 Hb_000762_050 Hb_002161_010--Hb_000762_050 Hb_002161_010--Hb_001038_020 Hb_000692_200 Hb_000692_200 Hb_003436_040--Hb_000692_200 Hb_001038_040 Hb_001038_040 Hb_003436_040--Hb_001038_040 Hb_009663_030 Hb_009663_030 Hb_003436_040--Hb_009663_030 Hb_011628_050 Hb_011628_050 Hb_003436_040--Hb_011628_050 Hb_003436_040--Hb_027403_010 Hb_001038_020--Hb_000003_530 Hb_001038_020--Hb_000762_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.56068 0.203775 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 5.11051

CAGE analysis