Hb_008566_060

Information

Type -
Description -
Location Contig8566: 56791-57669
Sequence    

Annotation

kegg
ID rcu:RCOM_1430130
description hypothetical protein
nr
ID XP_002512326.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RF07
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1430130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008566_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_185830_050 0.0268014451 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
3 Hb_001279_380 0.0327708892 - - PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]
4 Hb_000139_010 0.0357752553 - - -
5 Hb_027403_010 0.0398553864 - - P66 protein [Hevea brasiliensis]
6 Hb_002893_200 0.0415786387 - - aldehyde dehydrogenase, putative [Ricinus communis]
7 Hb_097940_010 0.0426868937 - - pollen protein Ole E I-like protein [Medicago truncatula]
8 Hb_000640_090 0.0462959425 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
9 Hb_007559_020 0.0509459109 - - peptidylprolyl isomerase, putative [Ricinus communis]
10 Hb_002014_140 0.0571496429 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
11 Hb_006901_010 0.0627750829 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
12 Hb_000083_020 0.0647066088 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
13 Hb_003337_080 0.0659428429 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
14 Hb_107748_010 0.0695353586 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
15 Hb_004611_010 0.070892438 - - Blue copper protein precursor, putative [Ricinus communis]
16 Hb_005605_020 0.0734127015 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
17 Hb_000805_080 0.0756528038 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
18 Hb_001046_060 0.0771702509 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
19 Hb_001104_080 0.0791842319 - - peroxiredoxin, putative [Ricinus communis]
20 Hb_000313_130 0.0802289115 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008566_060 Hb_008566_060 Hb_185830_050 Hb_185830_050 Hb_008566_060--Hb_185830_050 Hb_001279_380 Hb_001279_380 Hb_008566_060--Hb_001279_380 Hb_000139_010 Hb_000139_010 Hb_008566_060--Hb_000139_010 Hb_027403_010 Hb_027403_010 Hb_008566_060--Hb_027403_010 Hb_002893_200 Hb_002893_200 Hb_008566_060--Hb_002893_200 Hb_097940_010 Hb_097940_010 Hb_008566_060--Hb_097940_010 Hb_185830_050--Hb_001279_380 Hb_185830_050--Hb_027403_010 Hb_185830_050--Hb_000139_010 Hb_000640_090 Hb_000640_090 Hb_185830_050--Hb_000640_090 Hb_185830_050--Hb_002893_200 Hb_001279_380--Hb_000139_010 Hb_001279_380--Hb_097940_010 Hb_007559_020 Hb_007559_020 Hb_001279_380--Hb_007559_020 Hb_001279_380--Hb_027403_010 Hb_001279_380--Hb_002893_200 Hb_000139_010--Hb_097940_010 Hb_000139_010--Hb_007559_020 Hb_000139_010--Hb_027403_010 Hb_000139_010--Hb_002893_200 Hb_027403_010--Hb_097940_010 Hb_027403_010--Hb_007559_020 Hb_004611_010 Hb_004611_010 Hb_027403_010--Hb_004611_010 Hb_002014_140 Hb_002014_140 Hb_002893_200--Hb_002014_140 Hb_002893_200--Hb_000640_090 Hb_107748_010 Hb_107748_010 Hb_002893_200--Hb_107748_010 Hb_006901_010 Hb_006901_010 Hb_002893_200--Hb_006901_010 Hb_097940_010--Hb_007559_020 Hb_097940_010--Hb_002893_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.113075 87.03 9.55514 0 0.0301313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.179004 0 0 0.0568054 199.447

CAGE analysis