Hb_000640_090

Information

Type -
Description -
Location Contig640: 67420-67800
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11580g
description POPTRDRAFT_731703; CP12 domain-containing family protein
nr
ID XP_012082893.1
description PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9LZP9
description Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana GN=CP12-2 PE=1 SV=1
trembl
ID A0A067JWM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14028 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52079: 67304-67878
cDNA
(Sanger)
(ID:Location)		 006_D10.ab1: 67306-67878

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_090 0.0 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
2 Hb_107748_010 0.0356422328 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
3 Hb_005605_020 0.0389670294 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
4 Hb_002893_200 0.0416711519 - - aldehyde dehydrogenase, putative [Ricinus communis]
5 Hb_001046_060 0.0458565752 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
6 Hb_008566_060 0.0462959425 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003337_080 0.0492774773 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
8 Hb_001279_380 0.0498048934 - - PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]
9 Hb_185830_050 0.0524619808 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
10 Hb_000139_010 0.0540063934 - - -
11 Hb_002014_140 0.0552563561 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
12 Hb_097940_010 0.0557389061 - - pollen protein Ole E I-like protein [Medicago truncatula]
13 Hb_000805_080 0.0567440334 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
14 Hb_007559_020 0.0609592282 - - peptidylprolyl isomerase, putative [Ricinus communis]
15 Hb_011068_010 0.0618023705 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
16 Hb_006901_010 0.063200622 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
17 Hb_000825_010 0.0638019037 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
18 Hb_027403_010 0.0661085108 - - P66 protein [Hevea brasiliensis]
19 Hb_001621_090 0.06639908 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
20 Hb_001104_080 0.0679380128 - - peroxiredoxin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000640_090 Hb_000640_090 Hb_107748_010 Hb_107748_010 Hb_000640_090--Hb_107748_010 Hb_005605_020 Hb_005605_020 Hb_000640_090--Hb_005605_020 Hb_002893_200 Hb_002893_200 Hb_000640_090--Hb_002893_200 Hb_001046_060 Hb_001046_060 Hb_000640_090--Hb_001046_060 Hb_008566_060 Hb_008566_060 Hb_000640_090--Hb_008566_060 Hb_003337_080 Hb_003337_080 Hb_000640_090--Hb_003337_080 Hb_107748_010--Hb_005605_020 Hb_107748_010--Hb_001046_060 Hb_107748_010--Hb_002893_200 Hb_000805_080 Hb_000805_080 Hb_107748_010--Hb_000805_080 Hb_001104_080 Hb_001104_080 Hb_107748_010--Hb_001104_080 Hb_011068_010 Hb_011068_010 Hb_005605_020--Hb_011068_010 Hb_005605_020--Hb_001046_060 Hb_005605_020--Hb_003337_080 Hb_005605_020--Hb_000805_080 Hb_002014_140 Hb_002014_140 Hb_002893_200--Hb_002014_140 Hb_001279_380 Hb_001279_380 Hb_002893_200--Hb_001279_380 Hb_002893_200--Hb_008566_060 Hb_006901_010 Hb_006901_010 Hb_002893_200--Hb_006901_010 Hb_001046_060--Hb_000805_080 Hb_001046_060--Hb_011068_010 Hb_001287_070 Hb_001287_070 Hb_001046_060--Hb_001287_070 Hb_001046_060--Hb_003337_080 Hb_185830_050 Hb_185830_050 Hb_008566_060--Hb_185830_050 Hb_008566_060--Hb_001279_380 Hb_000139_010 Hb_000139_010 Hb_008566_060--Hb_000139_010 Hb_027403_010 Hb_027403_010 Hb_008566_060--Hb_027403_010 Hb_097940_010 Hb_097940_010 Hb_008566_060--Hb_097940_010 Hb_003337_080--Hb_011068_010 Hb_003337_080--Hb_000805_080 Hb_003337_080--Hb_001287_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.34452 112.714 17.1489 0.0935106 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.219209 0 0 0.0745575 247.497

CAGE analysis