Hb_005605_020

Information

Type -
Description -
Location Contig5605: 9198-12270
Sequence    

Annotation

kegg
ID rcu:RCOM_0592550
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012091026.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID B9SLK8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0592550 PE=4 SV=1
Gene Ontology
ID GO:0016020
description lrr receptor-like serine threonine-protein kinase efr

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005605_020 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
2 Hb_011068_010 0.0336817789 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
3 Hb_001046_060 0.0359229758 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
4 Hb_003337_080 0.0372383204 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
5 Hb_000640_090 0.0389670294 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
6 Hb_107748_010 0.0407799772 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
7 Hb_000805_080 0.0434681574 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
8 Hb_000825_010 0.0528916702 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
9 Hb_001287_070 0.0538775975 - - latex plastidic aldolase-like protein [Hevea brasiliensis]
10 Hb_001621_090 0.0570919542 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
11 Hb_005000_120 0.0571928587 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
12 Hb_001104_080 0.060727751 - - peroxiredoxin, putative [Ricinus communis]
13 Hb_000923_030 0.0608228119 - - F-box family protein [Populus trichocarpa]
14 Hb_097940_010 0.0633030599 - - pollen protein Ole E I-like protein [Medicago truncatula]
15 Hb_000010_380 0.0636996957 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
16 Hb_007559_020 0.0641983783 - - peptidylprolyl isomerase, putative [Ricinus communis]
17 Hb_001279_380 0.0648657619 - - PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]
18 Hb_000139_010 0.0654017324 - - -
19 Hb_008748_050 0.0655926848 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
20 Hb_002893_200 0.0670518592 - - aldehyde dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005605_020 Hb_005605_020 Hb_011068_010 Hb_011068_010 Hb_005605_020--Hb_011068_010 Hb_001046_060 Hb_001046_060 Hb_005605_020--Hb_001046_060 Hb_003337_080 Hb_003337_080 Hb_005605_020--Hb_003337_080 Hb_000640_090 Hb_000640_090 Hb_005605_020--Hb_000640_090 Hb_107748_010 Hb_107748_010 Hb_005605_020--Hb_107748_010 Hb_000805_080 Hb_000805_080 Hb_005605_020--Hb_000805_080 Hb_011068_010--Hb_003337_080 Hb_001287_070 Hb_001287_070 Hb_011068_010--Hb_001287_070 Hb_011068_010--Hb_001046_060 Hb_011068_010--Hb_000805_080 Hb_005000_120 Hb_005000_120 Hb_011068_010--Hb_005000_120 Hb_001046_060--Hb_000805_080 Hb_001046_060--Hb_001287_070 Hb_001046_060--Hb_107748_010 Hb_001046_060--Hb_003337_080 Hb_003337_080--Hb_000805_080 Hb_003337_080--Hb_000640_090 Hb_003337_080--Hb_001287_070 Hb_000640_090--Hb_107748_010 Hb_002893_200 Hb_002893_200 Hb_000640_090--Hb_002893_200 Hb_000640_090--Hb_001046_060 Hb_008566_060 Hb_008566_060 Hb_000640_090--Hb_008566_060 Hb_107748_010--Hb_002893_200 Hb_107748_010--Hb_000805_080 Hb_001104_080 Hb_001104_080 Hb_107748_010--Hb_001104_080 Hb_000010_380 Hb_000010_380 Hb_000805_080--Hb_000010_380 Hb_000805_080--Hb_001287_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.016547 0.680354 0.136058 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.62118

CAGE analysis