Hb_005000_120

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig5000: 102417-103851
Sequence    

Annotation

kegg
ID rcu:RCOM_1046780
description hypothetical protein
nr
ID XP_002514107.1
description hypothetical protein RCOM_1046780 [Ricinus communis]
swissprot
ID Q9SZI6
description Putative GATA transcription factor 22 OS=Arabidopsis thaliana GN=GATA22 PE=3 SV=1
trembl
ID B9RK63
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1046780 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45800: 102325-103658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_120 0.0 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
2 Hb_001046_060 0.0423682852 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
3 Hb_001287_070 0.0435359668 - - latex plastidic aldolase-like protein [Hevea brasiliensis]
4 Hb_001621_090 0.048746865 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
5 Hb_011068_010 0.0499835959 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
6 Hb_000039_210 0.0539339661 - - PREDICTED: uncharacterized protein LOC105649449 [Jatropha curcas]
7 Hb_000111_460 0.0562681637 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
8 Hb_005605_020 0.0571928587 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
9 Hb_000450_050 0.0582607916 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
10 Hb_008748_050 0.0583033135 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
11 Hb_000805_080 0.0642718358 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
12 Hb_000010_380 0.0655662908 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
13 Hb_003090_050 0.0666207279 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
14 Hb_003337_080 0.0680499902 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
15 Hb_107748_010 0.0694992713 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
16 Hb_000589_340 0.0709345799 - - unknown [Populus trichocarpa x Populus deltoides]
17 Hb_000923_030 0.0751208795 - - F-box family protein [Populus trichocarpa]
18 Hb_025325_010 0.0752707792 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
19 Hb_000640_090 0.0778873698 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
20 Hb_001416_130 0.0792452052 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005000_120 Hb_005000_120 Hb_001046_060 Hb_001046_060 Hb_005000_120--Hb_001046_060 Hb_001287_070 Hb_001287_070 Hb_005000_120--Hb_001287_070 Hb_001621_090 Hb_001621_090 Hb_005000_120--Hb_001621_090 Hb_011068_010 Hb_011068_010 Hb_005000_120--Hb_011068_010 Hb_000039_210 Hb_000039_210 Hb_005000_120--Hb_000039_210 Hb_000111_460 Hb_000111_460 Hb_005000_120--Hb_000111_460 Hb_005605_020 Hb_005605_020 Hb_001046_060--Hb_005605_020 Hb_000805_080 Hb_000805_080 Hb_001046_060--Hb_000805_080 Hb_001046_060--Hb_011068_010 Hb_001046_060--Hb_001287_070 Hb_107748_010 Hb_107748_010 Hb_001046_060--Hb_107748_010 Hb_003337_080 Hb_003337_080 Hb_001046_060--Hb_003337_080 Hb_001287_070--Hb_011068_010 Hb_003090_050 Hb_003090_050 Hb_001287_070--Hb_003090_050 Hb_001287_070--Hb_000805_080 Hb_000010_380 Hb_000010_380 Hb_001287_070--Hb_000010_380 Hb_006665_020 Hb_006665_020 Hb_001621_090--Hb_006665_020 Hb_000450_050 Hb_000450_050 Hb_001621_090--Hb_000450_050 Hb_001621_090--Hb_005605_020 Hb_001621_090--Hb_001046_060 Hb_025325_010 Hb_025325_010 Hb_001621_090--Hb_025325_010 Hb_011068_010--Hb_003337_080 Hb_011068_010--Hb_005605_020 Hb_011068_010--Hb_000805_080 Hb_000039_210--Hb_001287_070 Hb_006901_020 Hb_006901_020 Hb_000039_210--Hb_006901_020 Hb_000039_210--Hb_001046_060 Hb_000039_210--Hb_011068_010 Hb_000039_210--Hb_000111_460 Hb_000111_460--Hb_003090_050 Hb_008748_050 Hb_008748_050 Hb_000111_460--Hb_008748_050 Hb_000111_460--Hb_001287_070 Hb_000841_040 Hb_000841_040 Hb_000111_460--Hb_000841_040 Hb_011381_120 Hb_011381_120 Hb_000111_460--Hb_011381_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.45517 32.6165 6.92587 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.038977 0.0306607 0 0.0736491 78.0646

CAGE analysis