Hb_025325_010

Information

Type -
Description -
Location Contig25325: 19043-21747
Sequence    

Annotation

kegg
ID tcc:TCM_018911
description hypothetical protein
nr
ID KDP35623.1
description hypothetical protein JCGZ_09061 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09061 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26477: 19787-20504
cDNA
(Sanger)
(ID:Location)		 001_J23.ab1: 19787-20446 , 002_A02.ab1: 19792-20322 , 006_J01.ab1: 19792-20322 , 006_P14.ab1: 19790-20504 , 012_K03.ab1: 19792-20303 , 013_N21.ab1: 19787-20252 , 014_J24.ab1: 19792-20320 , 015_J19.ab1: 19792-20152 , 022_D20.ab1: 19787-20258 , 026_D19.ab1: 19790-20306 , 029_E18.ab1: 19787-20252 , 032_O04.ab1: 19787-20320 , 036_M16.ab1: 19794-20252 , 040_E12.ab1: 19792-20345 , 044_C11.ab1: 19792-20322

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025325_010 0.0 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
2 Hb_001621_090 0.0599399457 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
3 Hb_160045_010 0.0697993448 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005000_120 0.0752707792 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
5 Hb_006665_020 0.0788444502 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
6 Hb_006901_020 0.0803650653 - - PREDICTED: guard cell S-type anion channel SLAC1 [Jatropha curcas]
7 Hb_001338_130 0.0844776382 - - hypothetical protein MTR_4g129340 [Medicago truncatula]
8 Hb_001046_060 0.0864866816 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
9 Hb_000450_050 0.0936180182 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
10 Hb_005605_010 0.0940082789 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
11 Hb_000640_090 0.0952499825 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
12 Hb_005605_020 0.0964709991 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
13 Hb_000039_210 0.0966614489 - - PREDICTED: uncharacterized protein LOC105649449 [Jatropha curcas]
14 Hb_003337_080 0.0967305228 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
15 Hb_005245_110 0.0971109634 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
16 Hb_004837_230 0.0973485655 - - unknown [Populus trichocarpa]
17 Hb_107373_010 0.0974040172 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
18 Hb_011068_010 0.0983195007 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
19 Hb_000227_180 0.0983387324 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
20 Hb_107748_010 0.1016147237 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_025325_010 Hb_025325_010 Hb_001621_090 Hb_001621_090 Hb_025325_010--Hb_001621_090 Hb_160045_010 Hb_160045_010 Hb_025325_010--Hb_160045_010 Hb_005000_120 Hb_005000_120 Hb_025325_010--Hb_005000_120 Hb_006665_020 Hb_006665_020 Hb_025325_010--Hb_006665_020 Hb_006901_020 Hb_006901_020 Hb_025325_010--Hb_006901_020 Hb_001338_130 Hb_001338_130 Hb_025325_010--Hb_001338_130 Hb_001621_090--Hb_006665_020 Hb_001621_090--Hb_005000_120 Hb_000450_050 Hb_000450_050 Hb_001621_090--Hb_000450_050 Hb_005605_020 Hb_005605_020 Hb_001621_090--Hb_005605_020 Hb_001046_060 Hb_001046_060 Hb_001621_090--Hb_001046_060 Hb_185830_050 Hb_185830_050 Hb_160045_010--Hb_185830_050 Hb_000313_130 Hb_000313_130 Hb_160045_010--Hb_000313_130 Hb_001736_010 Hb_001736_010 Hb_160045_010--Hb_001736_010 Hb_000083_020 Hb_000083_020 Hb_160045_010--Hb_000083_020 Hb_005245_110 Hb_005245_110 Hb_160045_010--Hb_005245_110 Hb_005000_120--Hb_001046_060 Hb_001287_070 Hb_001287_070 Hb_005000_120--Hb_001287_070 Hb_011068_010 Hb_011068_010 Hb_005000_120--Hb_011068_010 Hb_000039_210 Hb_000039_210 Hb_005000_120--Hb_000039_210 Hb_000111_460 Hb_000111_460 Hb_005000_120--Hb_000111_460 Hb_005276_080 Hb_005276_080 Hb_006665_020--Hb_005276_080 Hb_001006_160 Hb_001006_160 Hb_006665_020--Hb_001006_160 Hb_005605_010 Hb_005605_010 Hb_006665_020--Hb_005605_010 Hb_006665_020--Hb_000450_050 Hb_004837_230 Hb_004837_230 Hb_006665_020--Hb_004837_230 Hb_006901_020--Hb_000039_210 Hb_006901_020--Hb_005000_120 Hb_006901_020--Hb_011068_010 Hb_003337_080 Hb_003337_080 Hb_006901_020--Hb_003337_080 Hb_006901_020--Hb_001287_070 Hb_107373_010 Hb_107373_010 Hb_001338_130--Hb_107373_010 Hb_001338_130--Hb_006901_020 Hb_000227_180 Hb_000227_180 Hb_001338_130--Hb_000227_180 Hb_001338_130--Hb_160045_010 Hb_011930_060 Hb_011930_060 Hb_001338_130--Hb_011930_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0911619 13.5423 175.841 17.0324 0 0.0406617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.211935 0.166551 0 0.034219 326.058

CAGE analysis