Hb_011930_060

Information

Type -
Description -
Location Contig11930: 39747-43391
Sequence    

Annotation

kegg
ID rcu:RCOM_0698790
description nitrate transporter, putative
nr
ID XP_002520155.1
description nitrate transporter, putative [Ricinus communis]
swissprot
ID Q8RX77
description Protein NRT1/ PTR FAMILY 2.13 OS=Arabidopsis thaliana GN=NPF2.13 PE=1 SV=1
trembl
ID B9S2D6
description Nitrate transporter, putative OS=Ricinus communis GN=RCOM_0698790 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nitrate transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05703: 39872-43463 , PASA_asmbl_05704: 41249-43463
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011930_060 0.0 - - nitrate transporter, putative [Ricinus communis]
2 Hb_000834_170 0.076559879 - - polygalacturonase, putative [Ricinus communis]
3 Hb_002025_220 0.0868244065 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
4 Hb_005305_140 0.1006477579 - - unknown [Populus trichocarpa]
5 Hb_000115_020 0.1082672013 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
6 Hb_001338_130 0.1118895128 - - hypothetical protein MTR_4g129340 [Medicago truncatula]
7 Hb_107373_010 0.1135378066 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
8 Hb_004109_140 0.114090836 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001864_050 0.1189890872 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
10 Hb_000482_160 0.1202974407 - - hypothetical protein JCGZ_07670 [Jatropha curcas]
11 Hb_001546_170 0.1231964774 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_005649_060 0.1241210828 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
13 Hb_000638_270 0.1263976136 - - -
14 Hb_002977_020 0.12674978 - - PREDICTED: glycine-rich cell wall structural protein 1.8-like [Nelumbo nucifera]
15 Hb_000307_150 0.1271869216 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
16 Hb_000809_190 0.1276164917 - - PREDICTED: myosin-6-like [Jatropha curcas]
17 Hb_000445_270 0.1282460486 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000189_460 0.1330311023 - - -
19 Hb_025325_010 0.1331155496 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
20 Hb_000937_010 0.1334722126 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011930_060 Hb_011930_060 Hb_000834_170 Hb_000834_170 Hb_011930_060--Hb_000834_170 Hb_002025_220 Hb_002025_220 Hb_011930_060--Hb_002025_220 Hb_005305_140 Hb_005305_140 Hb_011930_060--Hb_005305_140 Hb_000115_020 Hb_000115_020 Hb_011930_060--Hb_000115_020 Hb_001338_130 Hb_001338_130 Hb_011930_060--Hb_001338_130 Hb_107373_010 Hb_107373_010 Hb_011930_060--Hb_107373_010 Hb_004109_140 Hb_004109_140 Hb_000834_170--Hb_004109_140 Hb_000834_170--Hb_005305_140 Hb_000834_170--Hb_002025_220 Hb_005227_030 Hb_005227_030 Hb_000834_170--Hb_005227_030 Hb_002010_030 Hb_002010_030 Hb_000834_170--Hb_002010_030 Hb_002025_220--Hb_005305_140 Hb_002025_220--Hb_004109_140 Hb_000809_190 Hb_000809_190 Hb_002025_220--Hb_000809_190 Hb_000445_270 Hb_000445_270 Hb_002025_220--Hb_000445_270 Hb_005305_140--Hb_004109_140 Hb_000386_010 Hb_000386_010 Hb_005305_140--Hb_000386_010 Hb_001864_050 Hb_001864_050 Hb_005305_140--Hb_001864_050 Hb_001662_090 Hb_001662_090 Hb_005305_140--Hb_001662_090 Hb_005649_060 Hb_005649_060 Hb_000115_020--Hb_005649_060 Hb_000937_010 Hb_000937_010 Hb_000115_020--Hb_000937_010 Hb_000115_020--Hb_000809_190 Hb_000115_020--Hb_000445_270 Hb_004712_220 Hb_004712_220 Hb_000115_020--Hb_004712_220 Hb_001751_050 Hb_001751_050 Hb_000115_020--Hb_001751_050 Hb_001338_130--Hb_107373_010 Hb_025325_010 Hb_025325_010 Hb_001338_130--Hb_025325_010 Hb_006901_020 Hb_006901_020 Hb_001338_130--Hb_006901_020 Hb_000227_180 Hb_000227_180 Hb_001338_130--Hb_000227_180 Hb_160045_010 Hb_160045_010 Hb_001338_130--Hb_160045_010 Hb_107373_010--Hb_025325_010 Hb_002609_140 Hb_002609_140 Hb_107373_010--Hb_002609_140 Hb_107373_010--Hb_005649_060 Hb_107373_010--Hb_000115_020 Hb_000307_150 Hb_000307_150 Hb_107373_010--Hb_000307_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0177388 11.9455 68.0147 4.34778 0 0.0232727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0201438 0 0 0 79.7506

CAGE analysis