Hb_002025_220

Information

Type transcription factor
Description TF Family: C2H2
Location Contig2025: 164297-167226
Sequence    

Annotation

kegg
ID rcu:RCOM_0775730
description zinc finger protein, putative
nr
ID XP_002521877.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8GYC1
description Protein indeterminate-domain 4, chloroplastic OS=Arabidopsis thaliana GN=IDD4 PE=1 SV=1
trembl
ID B9S7A8
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0775730 PE=4 SV=1
Gene Ontology
ID GO:0003676
description indeterminate -domain isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20584: 164931-165086 , PASA_asmbl_20585: 165088-167175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_220 0.0 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
2 Hb_005305_140 0.0764237833 - - unknown [Populus trichocarpa]
3 Hb_004109_140 0.0832327025 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011930_060 0.0868244065 - - nitrate transporter, putative [Ricinus communis]
5 Hb_000834_170 0.0898067017 - - polygalacturonase, putative [Ricinus communis]
6 Hb_000809_190 0.0908679979 - - PREDICTED: myosin-6-like [Jatropha curcas]
7 Hb_000445_270 0.0978677405 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000638_270 0.0984751135 - - -
9 Hb_001864_050 0.106234281 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
10 Hb_000280_030 0.1115088298 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
11 Hb_000386_010 0.1133335851 - - conserved hypothetical protein [Ricinus communis]
12 Hb_080922_010 0.1137021539 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_002010_030 0.1161579157 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
14 Hb_001953_110 0.1184305408 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
15 Hb_000115_020 0.1189207988 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
16 Hb_023904_010 0.1189308262 - - -
17 Hb_001102_130 0.1195380211 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
18 Hb_000483_470 0.120142105 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_000705_010 0.1216025921 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
20 Hb_002762_020 0.1219921243 - - hypothetical protein VITISV_043202 [Vitis vinifera]

Gene co-expression network

sample Hb_002025_220 Hb_002025_220 Hb_005305_140 Hb_005305_140 Hb_002025_220--Hb_005305_140 Hb_004109_140 Hb_004109_140 Hb_002025_220--Hb_004109_140 Hb_011930_060 Hb_011930_060 Hb_002025_220--Hb_011930_060 Hb_000834_170 Hb_000834_170 Hb_002025_220--Hb_000834_170 Hb_000809_190 Hb_000809_190 Hb_002025_220--Hb_000809_190 Hb_000445_270 Hb_000445_270 Hb_002025_220--Hb_000445_270 Hb_005305_140--Hb_004109_140 Hb_000386_010 Hb_000386_010 Hb_005305_140--Hb_000386_010 Hb_001864_050 Hb_001864_050 Hb_005305_140--Hb_001864_050 Hb_001662_090 Hb_001662_090 Hb_005305_140--Hb_001662_090 Hb_005305_140--Hb_000834_170 Hb_004109_140--Hb_000834_170 Hb_005227_030 Hb_005227_030 Hb_004109_140--Hb_005227_030 Hb_004109_140--Hb_000386_010 Hb_004109_140--Hb_001864_050 Hb_000483_470 Hb_000483_470 Hb_004109_140--Hb_000483_470 Hb_011930_060--Hb_000834_170 Hb_011930_060--Hb_005305_140 Hb_000115_020 Hb_000115_020 Hb_011930_060--Hb_000115_020 Hb_001338_130 Hb_001338_130 Hb_011930_060--Hb_001338_130 Hb_107373_010 Hb_107373_010 Hb_011930_060--Hb_107373_010 Hb_000834_170--Hb_005227_030 Hb_002010_030 Hb_002010_030 Hb_000834_170--Hb_002010_030 Hb_000809_190--Hb_000445_270 Hb_000809_190--Hb_000115_020 Hb_101133_030 Hb_101133_030 Hb_000809_190--Hb_101133_030 Hb_000340_280 Hb_000340_280 Hb_000809_190--Hb_000340_280 Hb_000809_190--Hb_001864_050 Hb_000749_140 Hb_000749_140 Hb_000809_190--Hb_000749_140 Hb_001006_150 Hb_001006_150 Hb_000445_270--Hb_001006_150 Hb_080922_010 Hb_080922_010 Hb_000445_270--Hb_080922_010 Hb_005649_060 Hb_005649_060 Hb_000445_270--Hb_005649_060 Hb_000359_050 Hb_000359_050 Hb_000445_270--Hb_000359_050 Hb_005329_010 Hb_005329_010 Hb_000445_270--Hb_005329_010 Hb_000445_270--Hb_001864_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.66025 29.9819 2.51814 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0282382 0.0444334 0 0.744064 30.5498

CAGE analysis