Hb_002010_030

Information

Type -
Description -
Location Contig2010: 5875-22489
Sequence    

Annotation

kegg
ID rcu:RCOM_0407350
description Phytosulfokine receptor precursor, putative (EC:1.3.1.74)
nr
ID XP_002529540.1
description Phytosulfokine receptor precursor, putative [Ricinus communis]
swissprot
ID Q40284
description Anthocyanidin 3-O-glucosyltransferase 1 OS=Manihot esculenta GN=GT1 PE=2 SV=1
trembl
ID B9SU71
description Phytosulfokine receptor, putative OS=Ricinus communis GN=RCOM_0407350 PE=4 SV=1
Gene Ontology
ID GO:0016020
description tyrosine-sulfated glycopeptide receptor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20429: 12026-13471 , PASA_asmbl_20430: 5430-19299 , PASA_asmbl_20431: 18523-18670
cDNA
(Sanger)
(ID:Location)		 020_C14.ab1: 12026-12731

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002010_030 0.0 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
2 Hb_003767_060 0.0615418933 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
3 Hb_004017_030 0.0793300049 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
4 Hb_001369_340 0.0882697309 - - Peroxisomal membrane protein 11B [Theobroma cacao]
5 Hb_004109_140 0.0901058284 - - conserved hypothetical protein [Ricinus communis]
6 Hb_046739_010 0.090111459 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
7 Hb_005433_020 0.0929141127 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
8 Hb_006106_010 0.0942157383 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
9 Hb_000705_010 0.0966427529 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
10 Hb_000483_470 0.0967017166 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
11 Hb_007462_020 0.0977588356 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_002818_160 0.10122812 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
13 Hb_003373_050 0.1020548616 - - receptor protein kinase zmpk1, putative [Ricinus communis]
14 Hb_061126_010 0.1028696331 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
15 Hb_001953_110 0.1037337164 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
16 Hb_003209_150 0.1037943301 - - CLE9, putative [Ricinus communis]
17 Hb_000116_090 0.1044832555 - - catalase [Hevea brasiliensis]
18 Hb_000270_090 0.1070129966 - - nitrate transporter, putative [Ricinus communis]
19 Hb_000031_320 0.1083016983 - - unnamed protein product [Vitis vinifera]
20 Hb_063405_010 0.1084359043 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_002010_030 Hb_002010_030 Hb_003767_060 Hb_003767_060 Hb_002010_030--Hb_003767_060 Hb_004017_030 Hb_004017_030 Hb_002010_030--Hb_004017_030 Hb_001369_340 Hb_001369_340 Hb_002010_030--Hb_001369_340 Hb_004109_140 Hb_004109_140 Hb_002010_030--Hb_004109_140 Hb_046739_010 Hb_046739_010 Hb_002010_030--Hb_046739_010 Hb_005433_020 Hb_005433_020 Hb_002010_030--Hb_005433_020 Hb_003767_060--Hb_001369_340 Hb_003767_060--Hb_004017_030 Hb_003209_150 Hb_003209_150 Hb_003767_060--Hb_003209_150 Hb_007462_020 Hb_007462_020 Hb_003767_060--Hb_007462_020 Hb_002818_160 Hb_002818_160 Hb_003767_060--Hb_002818_160 Hb_004017_030--Hb_007462_020 Hb_000155_020 Hb_000155_020 Hb_004017_030--Hb_000155_020 Hb_004017_030--Hb_001369_340 Hb_010136_010 Hb_010136_010 Hb_004017_030--Hb_010136_010 Hb_002284_160 Hb_002284_160 Hb_004017_030--Hb_002284_160 Hb_000025_700 Hb_000025_700 Hb_001369_340--Hb_000025_700 Hb_004117_380 Hb_004117_380 Hb_001369_340--Hb_004117_380 Hb_001369_340--Hb_003209_150 Hb_001369_340--Hb_007462_020 Hb_005305_140 Hb_005305_140 Hb_004109_140--Hb_005305_140 Hb_000834_170 Hb_000834_170 Hb_004109_140--Hb_000834_170 Hb_005227_030 Hb_005227_030 Hb_004109_140--Hb_005227_030 Hb_000386_010 Hb_000386_010 Hb_004109_140--Hb_000386_010 Hb_001864_050 Hb_001864_050 Hb_004109_140--Hb_001864_050 Hb_000483_470 Hb_000483_470 Hb_004109_140--Hb_000483_470 Hb_000031_320 Hb_000031_320 Hb_046739_010--Hb_000031_320 Hb_002407_090 Hb_002407_090 Hb_046739_010--Hb_002407_090 Hb_011028_030 Hb_011028_030 Hb_046739_010--Hb_011028_030 Hb_033363_030 Hb_033363_030 Hb_046739_010--Hb_033363_030 Hb_096224_050 Hb_096224_050 Hb_046739_010--Hb_096224_050 Hb_003373_050 Hb_003373_050 Hb_005433_020--Hb_003373_050 Hb_004306_090 Hb_004306_090 Hb_005433_020--Hb_004306_090 Hb_000460_040 Hb_000460_040 Hb_005433_020--Hb_000460_040 Hb_000088_230 Hb_000088_230 Hb_005433_020--Hb_000088_230 Hb_002871_180 Hb_002871_180 Hb_005433_020--Hb_002871_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00589285 1.42018 4.33128 1.05513 0.00551442 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0133585 0.0210246 0 0.116694 5.16573

CAGE analysis