Hb_003209_150

Information

Type -
Description -
Location Contig3209: 84421-84807
Sequence    

Annotation

kegg
ID rcu:RCOM_1621570
description CLE9, putative
nr
ID XP_002512111.1
description CLE9, putative [Ricinus communis]
swissprot
ID Q9FZE4
description CLAVATA3/ESR (CLE)-related protein 9 OS=Arabidopsis thaliana GN=CLE9 PE=2 SV=2
trembl
ID B9RCW3
description CLE9, putative OS=Ricinus communis GN=RCOM_1621570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003209_150 0.0 - - CLE9, putative [Ricinus communis]
2 Hb_001369_340 0.0665914985 - - Peroxisomal membrane protein 11B [Theobroma cacao]
3 Hb_003767_060 0.0776260238 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
4 Hb_002307_120 0.0782516186 - - scab resistance family protein [Populus trichocarpa]
5 Hb_004117_380 0.0807717335 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
6 Hb_003654_020 0.0840655055 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
7 Hb_004017_030 0.089691079 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
8 Hb_002818_160 0.0956955125 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
9 Hb_001115_070 0.0970056321 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
10 Hb_002284_160 0.099114453 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
11 Hb_000031_320 0.10342587 - - unnamed protein product [Vitis vinifera]
12 Hb_002010_030 0.1037943301 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
13 Hb_000732_300 0.1048258243 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
14 Hb_046739_010 0.1064242096 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
15 Hb_005337_140 0.1076797954 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 1-like [Jatropha curcas]
16 Hb_000186_180 0.1155505459 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
17 Hb_031069_040 0.1191211399 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_007462_020 0.1191220571 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
19 Hb_000025_700 0.1209008466 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
20 Hb_000460_040 0.1215172335 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]

Gene co-expression network

sample Hb_003209_150 Hb_003209_150 Hb_001369_340 Hb_001369_340 Hb_003209_150--Hb_001369_340 Hb_003767_060 Hb_003767_060 Hb_003209_150--Hb_003767_060 Hb_002307_120 Hb_002307_120 Hb_003209_150--Hb_002307_120 Hb_004117_380 Hb_004117_380 Hb_003209_150--Hb_004117_380 Hb_003654_020 Hb_003654_020 Hb_003209_150--Hb_003654_020 Hb_004017_030 Hb_004017_030 Hb_003209_150--Hb_004017_030 Hb_001369_340--Hb_003767_060 Hb_000025_700 Hb_000025_700 Hb_001369_340--Hb_000025_700 Hb_001369_340--Hb_004117_380 Hb_001369_340--Hb_004017_030 Hb_007462_020 Hb_007462_020 Hb_001369_340--Hb_007462_020 Hb_002010_030 Hb_002010_030 Hb_003767_060--Hb_002010_030 Hb_003767_060--Hb_004017_030 Hb_003767_060--Hb_007462_020 Hb_002818_160 Hb_002818_160 Hb_003767_060--Hb_002818_160 Hb_002307_120--Hb_002818_160 Hb_005337_140 Hb_005337_140 Hb_002307_120--Hb_005337_140 Hb_002307_120--Hb_003767_060 Hb_002307_120--Hb_003654_020 Hb_000186_180 Hb_000186_180 Hb_002307_120--Hb_000186_180 Hb_004117_380--Hb_000025_700 Hb_004117_380--Hb_004017_030 Hb_005488_210 Hb_005488_210 Hb_004117_380--Hb_005488_210 Hb_005890_010 Hb_005890_010 Hb_004117_380--Hb_005890_010 Hb_003654_020--Hb_000186_180 Hb_000732_300 Hb_000732_300 Hb_003654_020--Hb_000732_300 Hb_000031_320 Hb_000031_320 Hb_003654_020--Hb_000031_320 Hb_003654_020--Hb_002818_160 Hb_004017_030--Hb_007462_020 Hb_000155_020 Hb_000155_020 Hb_004017_030--Hb_000155_020 Hb_010136_010 Hb_010136_010 Hb_004017_030--Hb_010136_010 Hb_002284_160 Hb_002284_160 Hb_004017_030--Hb_002284_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.01397 2.42568 0.977437 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.1903

CAGE analysis